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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley … guiding principles for participating on JGI Advisory Committees are outlined in this Code of Conduct. … The UEC represents the JGI user community and is responsible for providing input and advice …
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What Happens Underground Influences Global Nutrient Cycles
… Molecular Sciences Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for … (BER), Brodie and his colleagues have been running a soil-warming experiment in the Sierra Nevada mountain range … below the ground, influencing the production of microbial greenhouse gases and volatile organic compounds. This was …
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Exploring the Diversity of the American Prairie’s Switchgrass
… potential biofuel feedstock. But switchgrass has a complex genome and, as a species, encompasses dizzying diversity. So, a team of scientists made …
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups
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Meta-omics survey of [NiFe]-hydrogenase genes fails to capture drastic variations in H2-oxidation activity measured in three soils exposed to H2
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Igor Grigoriev
… of California, Berkeley. He contributed to the Human Genome Project and led annotation and analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the JGI Fungal Genomics program which … over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he launched scale-up of algal geomics and PhycoCosm …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse gas 20 times more potent than carbon dioxide. … metabolisms is “vastly underestimated.” In the March 4, 2019, issue of Nature Microbiology , they mined the Integrated …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and … Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program … and yeasts, outnumber their ancient relatives by nearly 10 to one in sequenced collections. Yet the early-diverging …
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Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation
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Transcriptional and metabolic stasis define desiccation-induced dormancy in the soil bacterium Arthrobacter sp. AZCC_0090 until water vapor initiates resuscitation
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