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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to … Genome Project (HGP), and building upon the principles for open access in the field of genomics established in  Bermuda (1996-1997) and reinforced by the  Fort Lauderdale Agreement (2003), the JGI …
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How Filamentous Fungi Sense Food
… . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct … hemicellulose. The Impact N. crassa is the model organism for filamentous fungi, all of which contain a wide array of … We acknowledge the use of deletion strains generated by Grant P01 GM-068087 …
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Better Genome Editing for Bioenergy
… A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in … tool that can help scientists engineer organisms for bioenergy applications. Cas9 needs guide RNA to lead it … , a team of researchers likewise honed their tool before felling their research problem: at a genetic level, how …
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JGI & KBase at PAG XXVII
… collaborative science opportunities. Learn how to apply for a project with the JGI Community Science Program, and … your plant genomics research. Click here to download a list of talks relevant to JGI science at PAG XXVII. On January … biology. Researchers who are applying genomic sequence information to BER-funded activities of plant systems that …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … on the sample. However, we don’t do this because they typically contain salts and other contaminants that interfere … involved? How long does it take to do all the analyses? A:  For the JGI  New Investigator and  Functional Genomics …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … manage the growth, yield and climate resilience of algae — for potential use as biomass or in biomass conversion to … thrives in the Arctic, and how different types of microbes form communities. As temperatures fluctuate, salt levels …
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River microbiomes from around the world: Kelly Wrighton
… Kelly Wrighton and her group at Colorado State University in Fort Collins have a massive undertaking: sequencing the …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… plant species have adapted to their local environments; for example, crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying … me a truck and I drove all over Texas with a shovel,” recalled study co-author David Lowry, who started as a …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has been developed to help inform scientists and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to … based on their ratios of small DNA sequence fragments called tetranucleotides, are a way to measure the collection …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of … cycles, and possibly cold-temperature enzymes for biotechnological use. Summary Conditions such as extreme … understand how they’ve adapted to these conditions, information that could have biotechnological applications. The …
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Silver age of GOLD introduces new features
… OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 … sequencing projects carried out at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … allows users to access curated metadata programmatically in a secure and reliable manner. The JGI team managing …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against infections — using … Maize ( Zea mays ) produces a plethora of antibiotics called zealexins. Even though scientists have identified at … revealed that just a handful of enzymes are needed to transform zealexins and related precursors into a bonanza of …
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