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Computationally Classifying Fungal Lifestyles
… known to infect most major food crops and feedstocks for biomass and biofuel production. Learning about the … A team led by researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported under …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a … addition to the synthetic biologist’s toolkit: a technique for  c hassis (or strain)-independent  r ecombinase- a … CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… with joint appointments at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … along with its life cycle. For most bacteria, their DNA floats freely within the cytoplasm of their cells. This … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida high school … islands to cattails. In 2018, the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … JGI researchers walked students through the processes of DNA sequencing, metagenome assembly, and even an …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Universidad de Zaragoza and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Laboratory (Berkeley Lab), relied on a model grass system for answers. Their work  recently appeared in  Nature … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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Annual Meeting 2027
…   Save the Date: March 16–18, 2027 The next JGI Annual Meeting will be held in March 2027 at the Oakland … this page as further details become available. Sign up for our newsletter to receive updates.    … Stefani Ferreira , JGI Administrative and Logistics Support  …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and … of data sequenced — that’s three-quadrillion base pairs of DNA sequence! To meet this “ data tsunami ,” as Kathy Yelick …
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Single Cell Research Group
… material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic … based on annotation may not be sufficient. A more recent effort in the Woyke lab is therefore focused on the …
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What Happens Underground Influences Global Nutrient Cycles
… DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of Energy … computational resources with JGI’s cutting-edge genomics, DNA synthesis and complementary capabilities. Because the …
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Understanding Wildfire Recovery, Starting in Soil
… in Nature Microbiology , went a step further, using both DNA and messenger RNA (mRNA) sequencing to identify those … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful … Sciences Laboratory and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI). EMSL and the JGI are DOE …
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You Can Move, But You Can’t Hide
… Researchers at the JGI develop a tool to quickly and accurately identify mobile … MGEs based upon their gene content and their genetic sequences. The software was created by researchers under the … at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley …
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Mapping Heat Resistance in Yeasts
… diversity in traits relevant to U.S. Department of Energy (DOE) missions in energy and environment. Summary There are … Genomics Project led by the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility of Lawrence … then used a series of random insertions of a foreign DNA sequence to generate a huge pool of mutants, each …
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