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Environmental Genomics Group
… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … for stable isotope probing metagenomics . mSystems , e01280-22. 10.1128/msystems.01280-22 Clum, A. et al. (2021)  DOE JGI metagenome workflow …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… when it comes to breaking down tough plant fibers. The Science Walk in a temperate forest filled with Norway spruce … The team worked with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency … areas that require cleanup and long-term monitoring. The DOE has been similarly invested in environmental management, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Strain Engineering
The focus of this group, in recent years, has been to bring generalizable technologies to bacteria, yeasts and algae previously with little to no genetic tools enabling … The developed strains represent an additional phase of user-accessible project types, in which DNA-based …
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Yasuo Yoshikuni
Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission of this program is … synthesis, strain engineering, and biosystems design for DOE-mission-relevant discovery and applications. This … has supported over 250 projects since it started. At the JGI, Dr. Yoshikuni also manages the Synthetic Biology …
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Eelgrass Proves to Be Much Younger Than We Thought
… about 2.5 million years less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley …
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Tanja Woyke Elected to American Academy of Microbiology
Congratulations to the JGI’s Tanja Woyke , who has been elected to the American … Genomics and Systems Biology Division of the Lab’s Biosciences Area since 2018. Woyke also holds appointments as … Symposium which is being held in conjunction with the DOE Joint Genome Institute’s 15th Annual Genomics of Energy …
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Cataloging the Microbes that Manage the Health of River Systems
… on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , researchers describe a … systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University … river microbiome datasets are also available through the DOE Systems Biology Knowledgebase, allowing researchers to …
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Alabama A&M Interns Access An Abundance of Knowledge
In 2024, the DOE Joint Genome Institute and Alabama A&M … an internship program to bring students to the JGI for research training experience. Enabled by the DOE … A&M University this fall for my master’s in plant soil science and my career focus is plant breeding. Ti’Yanna …
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Supercharging SIP in the Fungal Hyphosphere
… helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a … and the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley … HT-SIP is a capability available to request through  the JGI proposal calls . … Work at Lawrence Livermore National …
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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship paired … Mentors: Igor Grigoriev and Asaf Salamov, Fungal and Algal Program What effect has your summer internship with …
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Digging into Microbial Ecosystems Deep Underground
… deep underground, and before the pandemic, they took the JGI on a sampling field trip. One of the questions they’re … work builds off a proposal approved through a collaborative science initiative called Facilities Integrating … due March 16, 2022 to freely access resources at multiple DOE user facilities through the FICUS research support …
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