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2022 Progress Report
… Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area … (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Lawrence Berkeley National Laboratory … Lab), is to become the leading integrative genome science user facility enabling researchers to solve the world’s …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… it makes its sequencing, synthesis, metabolomics and data analyses capabilities available on a peer-reviewed competitive basis via its  User Programs . Q:  Are applicants outside of JGI eligible … being used to integrate the metabolomics and transcriptomic data? A:  We use MAGI. Reference: Erbiligin et al.  MAGI: A …
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iPHoP: A Matchmaker for Phages and their Hosts
… of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, … used 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the iPHoP program generated many new …
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Expanding Virophage Diversity
… By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … annotated algal genome is available on the JGI’s PhycoCosm data portal.) This research not only sheds light on the … (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… and barley. During her keynote speech to JGI staff and users at our 2022 Annual Meeting, Wessler discussed the … analysis to identify and characterize TEs, developing software to annotate them in plants other than maize … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Doubling Down on Known Protein Families
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … billion proteins with massively parallel computations.”  Guided by JGI scientists, the team embarked on a mission to … the collective power of more than 26,000 microbiome datasets, all accessible through the publicly available  …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… UDE familiarized themselves with the research programs and user facilities at Berkeley Lab. Commenting on the visit, … biology, single cell and systems biology, omics, and big data science, machine learning for experimental science, … environment.  During the tours through four national user facilities located at Berkeley Lab, including the JGI, …
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Fishing for Novel Cellulose Degraders
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported under Contract No. …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and stark the biogeographic boundary is between them. The data is somewhat beautiful in that regard,” said Andy Allen, … is food for larger organisms such as whales, penguins, and seals. “The biomass of krill at least equals the biomass of …
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Methanolobus use unspecific methyltransferases to produce methane from dimethylsulphide in Baltic Sea sediments
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From Textbook to Real World Applications
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