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iPHoP: A Matchmaker for Phages and their Hosts
… of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, … used 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the iPHoP program generated many new …
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Expanding Virophage Diversity
… By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Fishing for Novel Cellulose Degraders
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported under Contract No. …
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Making a Lichen Together
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and his team at the JGI contributed … partners. Yet the team found none. Instead, the partners stubbornly maintained complete autonomy; they can be isolated … variation in its progeny. The study’s transcriptomic data also identified many genes potentially important for …
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity hotspots … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … biodiversity. Using publicly available genome sequence data generated over the past three decades, their study …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… and barley. During her keynote speech to JGI staff and users at our 2022 Annual Meeting, Wessler discussed the … analysis to identify and characterize TEs, developing software to annotate them in plants other than maize … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Understanding Wildfire Recovery, Starting in Soil
… — mainly actinobacteria, as well as proteobacteria, bacteroidata, and patescibacteria. A major strength of this kind of … Institute (JGI). EMSL and the JGI are DOE Office of Science User Facilities located at Pacific Northwest National … enabled by the Facilities Integrating Collaborations for User Science (FICUS) initiative . In this program, …
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Microbial Genomics & Metagenomics (MGM) Workshop
…   This highly hands-on workshop is designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence data. IMG/M is a web-based platform that provides access to …
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Triggering Morel Fruiting
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on just how morel fruiting is … every family of fungi. In the following guest piece, JGI user Dr. Tan details the results of the team’s work. Morels … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … annotated algal genome is available on the JGI’s PhycoCosm data portal.) This research not only sheds light on the … (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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A Model System for Perennial Grasses
… DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, report the culmination of nearly a decade of … of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the … HAL2 and FIL2 genomes on Phytozome Data portal …
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Improving the Cacao Genome and Phytozome
… by a Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the … to a high quality modern standard and includes RNA-seq data. The improved  T. cacao Matina 1-6 genome is now … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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