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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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Nikos Kyrpides
… focus on Microbiome Research with an emphasis on Microbiome Data Science. His group is developing novel methods for … analysis, as well as mining and visualization of big data. … BA in Biology, Aristotle University of Thessaloniki, …
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JGI Welcomes New UEC Members
The JGI User Executive Committee (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their access to technical capabilities JGI offers, …
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Anna Ratner
… is working on the display and visualization of large omics data. …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … identified. The JGI researchers surveyed publicly available data in the JGI’s  IMG/M database , information the Probst … find 13 additional predicted viral  genomes . The team dubbed these viruses Altivir, finding them in three of the …
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JGI Scientists Pen Genome Watch Articles
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … our role as a Department of Energy Office of Science User Facility. As such, JGI is involved in a broad variety … metabolism . And postdoctoral researcher Sara Calhoun, data scientist Stephen Mondo, and  Fungal and Algal program …
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Using BLAST to Teach “E-value-tionary” Concepts
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Jinghua Jenny Huang
… of large amount isolate genomic and metagenomic data stored in Oracle databases, Berkeley DB and files in various formats. …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… them are actinobacteria. And so we get a lot of them from databases of organisms, so things like the NRL database - or online catalog, I guess. So we've also been … that makes it really challenging to actually interpret the data. And so we've been able to get these-- DAN: In terms of …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
Nikos Kyrpides, Natalia Ivanova and Simon Roux, along with data from a consortium that included Susannah Tringe and …
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Marcel Huntemann
… metagenomes. He also works on automating intra-department data exchange and assists with large scale computations on …
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support Analysis group. He received his Ph.D. from the … in bacteria. Since 2016, he has been the lead of the User Support Analysis group. The group performs custom … transcriptome, epigenome and other functional genomics datasets generated by JGI user science projects. … BS in …
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