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Katherine Louie
… stable isotope probing (SIP) to assess metabolite turnover, DNA-SIP for helping identify active micro-organisms within … BP, Olson HM, Purvine SO, Salamov A, et al. Anaerobic gut fungi are an untapped reservoir of natural products. Proc … in rhizosphere microbial community assembly. Nat Microbiol. 2018;3: 470–480. 7. Louie KB, Bowen BP, McAlhany S, Huang Y, …
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FICUS Overview
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How Maize Makes An Antibiotic Cocktail
Science Program . And the work is part of a  larger CSP Functional Genomics proposal to understand terpene  … a DOE Joint Genome Institute Community Science Program (JGI-CSP) grant (CSP2568 to P.Z., ES and AH), and by a fellowships provided …
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Dan Rokhsar
Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, Computational Biology, …
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The draft genome sequence of the ascomycete fungus Penicillium subrubescens reveals a highly enriched content of plant biomass related CAZymes compared to related fungi
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Metagenome Program
… functions that shape ecosystems. By decoding the microbial DNA in natural environments, the Program provides a snapshot …
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Busting the Unbreakable Lignin
New evidence shows anaerobic fungi can degrade the hardiest of plant components   The … process. Now, a new study shows how anaerobic fungi — the kind living in the stomachs of livestock — are … components into  biofuels and bioproducts. If anaerobic fungi could be used to effectively modify lignin without …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the … the CRAGE technology. Instead of only accommodating one DNA insertion, the new system, CRAGE-Duet, can accommodate … bacterial strains as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… time (1986) 98% of the human genome was thought to be junk DNA, so there was quite a bit of resistance to use resources … legal and social affairs — before stepping into his role as program manager in 2006 when the JGI transitioned … microbial genetics. Drell held the role until he retired in 2018. “While I never said this out loud,” Drell said, …
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The JGI announces 2024 awardees for our Community Science Program annual call
… “It’s exciting to see the diverse portfolio of successful CSP proposals this year,” noted Tanja Woyke, who heads JGI’s … and I look forward to seeing their outcomes.” The annual CSP call is focused on large-scale genomic science projects … here on our website . See below for the full list of 2024 CSP Annual Call awardees. …
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What Happens Underground Influences Global Nutrient Cycles
… and biochemical reaction networks, and also assessing the role of viruses in the soil microbiome. Another accepted … temperatures on tropical rainforests, which play a key role in the global carbon cycle. Tfaily’s team is … computational resources with JGI’s cutting-edge genomics, DNA synthesis and complementary capabilities. Because the …
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