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… By Friday, October 18, the production sequencing labs in Building 100 were silent. Twenty years after the JGI united … the genomics expertise of three national labs in one long building at Walnut Creek, after countless generations of … shipped to, and then installed at the  Integrative Genomics Building , JGI’s newly-built home located in the heart of …

… microbial diversity is immense, yet much of it remains unknown. For more than a decade, researchers around the world … Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from curated DSMZ isolates, for … reactions. For this article alone, more than 600 genomes (dubbed “GEBA-Actino”) were sequenced from DSMZ …

… sample and project metadata, and to access JGI tools and systems. … IMG (citation: https://doi.org/10.1093/nar/gkaa939 ) Metagenomes and Single Cells: IMG/M   (citation: … are available for functional annotation/curation of your genomes Microbial (IMG–ER) Metagenome and Single Cell (IMG/ …

… data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … are built? A: EcoGroups are built based on what is known about the organism’s ecology, mostly based on … (2018) Fungal Genome Annotation. In Methods in molecular biology 1775:171-184. Furthermore, Annotration SOP with …

… Mr. Rath has been leading the Systems Infrastructure Team at the JGI since 2020. Before … where he first stumbled from software development into building productive infrastructure in close collaboration …

… honors! Tringe, a microbiologist, was recognized for “advances in sequence-based studies of microbial assemblies, … director of Berkeley Lab’s Environmental Genomics and Systems Biology Division, and JGI’s deputy for user programs. She …

… Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of California, Berkeley. He … and led annotation and analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the … Fungal Genomics program which resulted in over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he launched …

… to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … them. Based on data reported in the April issue of Soil Biology and Biochemistry , the team found that fungi are … nitrogen and using it as an energy source. No fungi are known to be able to do this. JGI and EMSL’s contributions …