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Green Algae Reveal One mRNA Encodes Many Proteins
Academy of Sciences , a team of researchers has found numerous examples of polycistronic expression – in which two or … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Lab and the Environmental … Sciences Laboratory (EMSL), a DOE Office of Science user facility. The work was partly enabled by the …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and … and genomic toolkit for the perennial grass Miscanthus sinensis has been published. Analysis of the genome … Department of Energy (DOE) Bioenergy Research Center, along with researchers from the Energy Biosciences Institute, the …
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The Expanding Universe of Methane Metabolisms in Archaea
… insights into an ancient metabolism. Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions … that methanogenesis is one of the oldest metabolisms, with the first traces possibly at ~3.5 Gy (billion years),” … genes for both sulfur and methane metabolism. The newly described Korarchaeota were identified in thermal …
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Better Genome Editing for Bioenergy
… of the genes in a lipid-prolific yeast. The Impact The team used this set of guide RNAs on  Yarrowia lipolytica to … of researchers sought to disrupt every gene in the genome with CRISPR-Cas9 in order to interrogate each one’s … of Naval Research under grant  N00014-15-1-2785 . JW acknowledges additional support from the National Science …
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A One-Stop Shop for Analyzing Algal Genomes
… is one of the largest data repositories of its kind, with an interactive browser that allows algal scientists and enthusiasts to look deep into more than 100 algal genomes, … built-in connection to the DOE Systems Biology Knowledgebase (KBase) also allows researchers to study how …
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Learning to Look
Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” … distinguishing features. Several characters may be spotted with a striped scarf, striped hat, round-rimmed glasses, or … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an algorithm that a computer could …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … the crop for additional end products. The genetic diversity within this set of plants, each with a fully-sequenced …
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Ben Bowen
… in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and … Exceptional Achievement 2012 UC Berkeley, Leadership and Development Program Awardee 2005-2009: NIH K25 Mentored … T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite atlases. …
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JGI@25: Using Team Science to Build Communities Around Data
Spatafora and Jason Stajich from UC Riverside would focus on broad sampling of early diverging fungi, and Francis … National Institute for Agricultural Research (INRAE) focused on in-depth exploration of ecology-related groups of … together over 400 proposal collaborators and co-authors with affiliations at over 180 organizations in 29 U.S. …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do anything, they must find a … these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of …
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NeLLi — Symposium on New Lineages of Life
… to function’ umbrella, this symposium will further focus on computational approaches to characterize novel … and biomedicine, as well as biotechnology. NeLLi August 24 – 25, 2023 Session Speakers:   Laura Hug , University … Program Tanja Woyke, Microbial Program Robert Bowers,  User Project Coordination Rekha Seshadri,  Functional …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… what makes polar photosynthesizers tick. He’s working with researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … a cold-adapted microalga: the diatom Fragilariopsis cylindrus . At that time, they noted that the F. cylindrus genome …
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