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JGI Interns at UC Merced Earn CAMP Merit Awards
… between DOE JGI and UC Merced to promote diversity and inclusion in science and research, two undergraduate students … at UC Merced. Cristhian and Bryan both spoke briefly about their internship experiences at the DOE JGI – revisit … . Additionally, Bryan was featuring in a video about the importance of mentoring with Tanja Woyke and her …
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Tracking the Origins of Methane-Producing Microbes
… the total global methane production. They are thought to use billions of tons of the carbon dioxide trapped in … on the global carbon cycle. All methanogenic archaea use one of three pathways for methanogenesis: … and, acetoclastic. All three pathways require the gene cluster for methane production known as Mcr. Until recently, …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… comparative analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … information as well as of important descriptive metadata about each strain. “This has been a very fruitful …
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Kjiersten Fagnan
Research Division.. As a postdoc, her research focused on stable and accurate computational methods for … for the overall design and implementation of computational biology and bioinformatics approaches in support of meeting … 2018 NERSC, CRD Petascale Postdoctoral Fellow … Education … About the JGI Chief Informatics Officer … Selected …
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Learning to Look
Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” … these features. As described July 22, 2019, in  Nature Microbiology , a team led by scientists at the U.S. Department of … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an algorithm that a computer could …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… to a pathogen. This ‘“alien’” organism — one previously unseen — is, in fact, a microscopic water mold, … ramorum (pronounced: Fy-TOFF-thor-uh ra-MOR-um) the genus in Latin translates to “plant destroyer” and it has … scores of nurseries across the nation, elevating concerns about the pathogen to an all-time high. California …
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JGIota: Sequencing Shiitakes with David Hibbett
David Hibbett of Clark University fills us in on the kind of decay that makes shiitake mushrooms special. This week, he and 39 collaborators published a paper tracing how these mushrooms have evolved.  …
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JGI-UC Merced Interns Share Their 2021 Experiences
… working virtually with JGI mentors to investigate rigorous research projects, hone science presentation skills, and … returned to re-engage with their mentors from the previous year and continue working on their research project! The … foster a diverse future workforce in science. To learn more about each intern’s experience during their internship, …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… reference sequence of the complex switchgrass genome , using samples from common gardens growing across the … involved researchers at the University of Texas at Austin, HudsonAlpha, and the JGI. Building off this work, … Project DOE Chromosome publications: The DNA sequence and biology of human chromosome 19 The DNA sequence and …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … evolution of three traits relevant to DOE interests: photosynthetic transitions, specialized metabolites, and … University of East Anglia was also approved to learn more about the roles of diatoms in carbon fixation and in aquatic …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… scale: fungi stretch a network of tendrils called arbuscules into a plant’s root cells, and both organisms … been able to study both sides of this interaction up close, using RNA sequencing to understand gene expression: one of … circular capture areas roughly 55-microns in diameter — about the width of a human hair. At such resolution, this …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… scale: fungi stretch a network of tendrils called arbuscules into a plant’s root cells, and both organisms … been able to study both sides of this interaction up close, using RNA sequencing to understand gene expression: one of … circular capture areas roughly 55-microns in diameter — about the width of a human hair. At such resolution, this …
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