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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … Hungate1000, a catalog of 410 rumen microbe genomes. The project relied upon resources from laboratories around the … and test a ribonuclease capable of knocking down human RNA the way that CRISPR-Cas9 systems snip DNA. This could …
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Tanja Woyke Elected to American Academy of Microbiology
… honor,” said Axel Visel , JGI Deputy for Science Programs. “It clearly speaks to the enormous impact her … to have scientists of Dr. Woyke’s caliber support the JGI User community in accessing our resources and help them to … with Woyke, two JGI users were also elected to the AAM: fungal researcher Jason Stajich of the University of …
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Micro-Scale Applications Group
… Probing (SIP) Metagenomics pipeline that utilizes internal analytical standards to accurately measure … The JGI provides users access to cutting-edge cell sorting, DNA …
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial ecology … She stepped into the Metagenome Program Lead position in 2017. She also leads the DOE’s multi-lab National Microbiome Data Collaborative (NMDC). Prospective users with questions on how to partner with the Metagenome …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… from UDE familiarized themselves with the research programs and user facilities at Berkeley Lab. Commenting on the visit, … the Advanced Light Source, future collaborative research projects were also intensively discussed. The Berkeley … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Triggering Morel Fruiting
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on just how morel fruiting is … source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every … by the black morel, as well as the gene-expression programs encoding the biochemical processes unveiled by …
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iPHoP: A Matchmaker for Phages and their Hosts
… nutrient cycling, or carbon sequestration. Summary Existing programs use a variety of approaches to match a virus with a … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, … pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, …
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Crysten Blaby-Haas
… Dr. Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a partnership between JGI and the … Molecular Foundry, a nanoscale research and knowledge-based user facility at Berkeley Lab. She is spearheading the … Handling Editor, Journal Experimental Botany, 2022 – present University of …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … to the public in a highly-cited 2006 publication in the journal Science . This provided a framework essential to … engagement activities under the umbrella of the SOD Blitz Project. In hopes of controlling the spread of the disease, …
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A Plant Root Atlas for Tracking Developmental Trajectories
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and spatial transcriptomics technologies. JGI Science Programs Deputy Axel Visel provided a broader perspective:  … Phytozome and will be available for future single-cell projects.” The Berkeley Lab  Biosciences Area has been …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… activities catalyzed by microbial communities. By pairing RNA or DNA sequencing with tracings of stable, heavy … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … labs, as well as Pett-Ridge’s group, will assemble input materials, with eight or nine different teams then …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… This year’s list features 6,900 researchers working in 21 fields.  Congratulations to the  2022 Highly Cited … anniversary, published in  Nucleic Acids Research .  ID’ing RNA viruses with ease : Searching for RNA sequences within a database can be like combing for the …
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