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… to the proposers of the 19 proposals selected for the 2023 Community Science Program call of the U.S. Department of …

… a combination of transcriptomic, metatranscriptomic, and metagenomic approaches. …

National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing protocols … Metatranscriptomic information was also generated. The 3.8 trillion bases or Terabases of sequencing data, along … were also funded under the RC-SFA at PNNL by DOE BER ESS. Metagenomic and metatranscriptomic sequencing was performed at …

… updates and new features. Nucleic acids research Jan 2023 Camargo AP, Nayfach S, Chen I-MA, Palaniappan K, Ratner A, … et al. IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata. Nucleic acids … K, and Chu K. Maintaining a Microbial Genome & Metagenome Data Analysis System in an Academic Setting, SSDBM …

… to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides …

… 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, … 20 UC Merced students have contributed to the research of 13 JGI scientists, and a few of the mentors shared their … and hard work have carried it through the difficult early stages, so I can begin biological analysis of the data sooner …

… analyses, next-generation transcriptome de novo assembly, metagenome and metatranscriptome assembly, Hadoop based on … scale data analysis in the cow rumen and sheep rumen metagenome projects. Standing at the intersection between the … data analytic framework MetaBAT , an automatic metagenome binning software … Education … Selected …

During the summer of 2021, 13 interns from UC Merced spent eight weeks working virtually … … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration of Phage Impact on … of Rice and Arabidopsis Roots … Making Big Data Metagenomic Clustering Scalable … Cataloging Lineage Specific …

… use to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to … search tool combed through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 … By the numbers, the new approach detected inoviruses in 3,609 (6 percent) of the 56,868 microbial genomes and 2,249 …

… in Physics, Cornell University, NY … RJ Craig et al., 2023.The Chlamydomonas Genome Project, version 6: Reference … structural mutation in the laboratory. The Plant Cell 35 (2), 644-672 A Sreedasyam et al., 2023. JGI Plant Gene Atlas: an updateable transcriptome …