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2022 Progress Report
… Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab … Berkeley National Laboratory (Berkeley Lab), is to become the leading integrative genome science user facility …
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on presentations to peatlands Travis Lawrence sits in … one of the first students to participate in the DOE Joint Genome Institute (JGI)-UC Merced internship program, … . “There was a lot of freedom to explore,” he recalled. His project involved developing an algorithm and although the …
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A User-Centered Approach to Accessing JGI Data
… (https://data.jgi.doe.gov/) launched last year, it was only accessible through the plant portal  Phytozome . Now … limited to: Public data: datasets associated with completed projects that are eligible for public release, have … metadata criteria. Wilson said that the Data Portal and  Genome Portal will continue to run in parallel for now. …
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Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows
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Identification of novel biomass‐degrading enzymes from genomic dark matter: Populating genomic sequence space with functional annotation
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Complete Genome Sequence of Nitrobacter hamburgensis X14 and Comparative Genomic Analysis of Species within the Genus Nitrobacter▿ †
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The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution
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Gut Fungi: Unexpected Source of Novel Chemicals
… Fungi from herbivore poop make surprisingly complex compounds — an energetically expensive feat thought … and help them digest their last leafy meal. In their evolutionary history, these fungi branched off early from aerobic … called natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for …
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal genomes. The Science In a … production. Efforts such as the 1000 Fungal Genomics Project led by the DOE Joint Genome Institute (JGI), a DOE … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a … techniques) and utilizing these resources to understand genome organization and regulation, abiotic stress … with their microbiomes. In addition, his group conducts comparative genomic research to understand the evolutionary …
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Graduate Students Get Thesis Research Opportunity at the JGI
… the opportunity to pursue part of their thesis research at one of the DOE national laboratories or national user … between 3-12 consecutive months. Their proposed research projects address scientific challenges central to Office of … caliber of scientists.” For her project, “Microbial Community Structure and Methane Production in California’s …
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Fungus Fuels Tree Growth
… Researchers start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.   … To see how the fungus affected poplar growth, the team compared poplar cuttings grown with and without an … partnered with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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