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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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A single-base resolution map of an archaeal transcriptome
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Yasuo Yoshikuni
… has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the … Editorial board member of Synthetic Biology (Oxford Journal) Review committee member of International Journal of … … DNA Synthesis Science Program … Education … Selected Publications … Awards and Honors …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … first closed and finished genome derived from an uncultured bacterial single cell – a symbiont of the green …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… between fungal guilds, genes and function. If a tree falls in the forest — whether or not anyone registers the sound — … They sampled soils in four forest ecosystems, extracted RNA to understand gene expression, and developed new tools to map that soil RNA to fungal genomes.  The U.S. Department of Energy (DOE) …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have … 2007 the full genome was sequenced and published in the journal Science . At the time, the project was co-led by Daniel … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… diversity of large and giant viruses. While the microbes in a single drop of water could outnumber a small city’s … not harmful to humans could be even larger. Viruses infect bacteria, archaea and eukaryotes, and they range in particle … large and giant. In a recent study  published in the journal  Nature , a team led by researchers at the U.S. …
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JGI Scientists Pen Genome Watch Articles
Tanja Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — … and they agreed, providing three articles for the journal with Du Toit as their editor. The partnership has … Program lead, shone a spotlight on  ammonia oxidizing archaea and what we’re learning about their metabolism . And …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 … interested in better characterizing the role endosymbiotic bacteria play on mating habits of Mucoromycota fungi, and …
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Learning to Look
Machine learning approach significantly expands inovirus … case, the machine “learned” to identify a certain type of bacterial viruses or phages called inoviruses, which are … in size and function to those in typical bacterial or archaeal genomes, the sequence is most likely not an …
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Offerings & Capabilities
… of the JGI’s Genomic Technologies department is   ensuring users have access to cutting-edge capabilities to help advance their science by … Sequencing, Synthesis and Metabolomics. Strong internal collaborations with  Science Programs and  Operations …
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Synthetic Biology Informatics Group
Software engineers in the Synthetic Biology Informatics Group develop, … Biology Program .  Representative software includes: gRNA-SeqRET , an organism-agnostic CRISPR gRNA design tool BOOST , which provides a suite of tools to …
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