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Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics
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metagRoot: a comprehensive database of protein families associated with plant root microbiomes
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Population genomics provides insights into the genetic basis of adaptive evolution in the mushroom-forming fungus Lentinula edodes
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Unique genomic traits for cold adaptation in Naganishia vishniacii, a polyextremophile yeast isolated from Antarctica
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The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history
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The Chlorella variabilis NC64A Genome Reveals Adaptation to Photosymbiosis, Coevolution with Viruses, and Cryptic Sex
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The role of zinc in the adaptive evolution of polar phytoplankton
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Partners
… and develops others providing complementary expertise to advance the science and serve as impact multipliers . The … our Plant Program, and is further leveraging the services of the Arizona Genomics Institute for DNA and RNA extractions to support …
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Ian Blaby
… design and assembly, strain engineering and bioinformatic tool development/data analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a group lead at … National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral positions at …
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Streamlining Regulon Identification in Bacteria
… technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … one type of RNA polymerase responsible for each gene. These bacterial RNA polymerases are made up of a core enzyme …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health and environmental … microbiomes. Scientists conducted a shotgun metagenomic survey on three types of conifers–limber pine, … forests and the atmosphere. The team learned that some bacterial families carry genes for degrading monoterpenes …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … has allowed the research team to associate climate adaptations with switchgrass biology. Switchgrass has a … and environments. The long-term investments in both the genomics and gardens are helping these shrubby grasses …
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