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Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale
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Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome
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Heterospecific Neighbor Plants Impact Root Microbiome Diversity and Molecular Function of Root Fungi
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The rhizosphere microbiome of burned holm-oak: potential role of the genus Arthrobacter in the recovery of burned soils
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Metagenomes and Metagenome-Assembled Genomes from Microbiomes Metabolizing Thin Stillage from an Ethanol Biorefinery
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A global soil plasmidome resource unveils functional and ecological roles of plasmids in soil microbiomes
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… are eating what,  in the environment.  This distinction — between presence and participation — is especially important … Isotope Probing Sequence (MISIP) . They differentiate between required information and terms, such as isotopes … with JGI Metagenome Program head Emiley Eloe-Fadrosh to host researchers in Berkeley.  Organizing this workshop, …
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The fungus that made itself at home
… the dry rot Serpula lacrymans adapted to a new ecological habitat. The Science By comparing genetic information from … fungus has responded to manmade changes in its ecological habitat, adapting to thrive in built environments. Summary …
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2024 Progress Report
… the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab … processed 13,700 metabolomics samples With our users, 247 publications were published   … initiation and progress calls, outreach activities and hosting visiting scientists at all stages of their careers. …
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JGI Early Career Researchers Featured in mSystems Special Issue
… reads to link mobile elements such as plasmids to microbial host cells. In a separate article, research scientist Simon … and environmental processes, especially by modifying host cell metabolism and altering cell fitness. As the vast … high-throughput and high-resolution studies of interactions between host cells and viruses in the environment. …
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Optofluidic Raman-activated cell sorting for targeted genome retrieval or cultivation of microbial cells with specific functions
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The White-Rot Basidiomycete Dichomitus squalens Shows Highly Specific Transcriptional Response to Lignocellulose-Related Aromatic Compounds
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