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Habitat-Lite: A GSC Case Study Based on Free Text Terms for Environmental Metadata
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Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance
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A metagenomic perspective on the microbial prokaryotic genome census
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … by combining a study of microbial communities (metagenomics) and a chemical labelling approach. The Impact … nitrogen, but the viruses that infect Altiarchaea cause the cells to burst. This action triggers subsurface carbon …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
Congratulations to Susannah Tringe , one of eight scientists and … highest honors! Tringe, a microbiologist, was recognized for “advances in sequence-based studies of microbial … is the interim director of Berkeley Lab’s Environmental Genomics and Systems Biology Division, and JGI’s deputy for …
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JGI-UC Merced Interns Share Their 2021 Experiences
… 13 interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research … the Mitochondria Internship … Cross Species Integration of Single Cell Transcriptomes … Exploring and Visualizing P. hallii …
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You Can Move, But You Can’t Hide
Researchers at the JGI develop a tool to quickly and accurately … entities that seek to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are … cycles around them. By understanding more about the genomics of MGEs and their evolution at the cellular level, …
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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between … successfully automated aspects of a commonly-used process for studying microbial communities, with results published … National Laboratory, have developed a semi-automated pipeline to apply robotics to the process. This automation …
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Analysis of Porphyra Membrane Transporters Demonstrates Gene Transfer among Photosynthetic Eukaryotes and Numerous Sodium-Coupled Transport Systems      
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JGI@25: Fueling Investigation into Methane-Making Microbes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … within their rumen. There is another climate-minded reason for studying rumen: Livestock live off plant matter, and … a Genome Insider podcast minisode. To date it is the single largest effort to provide a cataloged and curated …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
The JGI Engagement Webinar held November 5, 2020 (watch the  video … directly measure environmental or biological samples (like cell media or lake water) without doing a metabolite … analyses? A:  For the JGI  New Investigator and  Functional Genomics proposal calls, projects can request up to 50 polar …
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Environmental distribution and population biology of Candidatus Accumulibacter, a primary agent of biological phosphorus removal
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