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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a Research … years where he was a driving force behind the development of numerous genomic resources that fostered the widespread … Brachypodium distachyon is a small annual grass that is well …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have quickly accelerated understanding of giant viruses. The Science In the last thirty years, in … This work was conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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One Bacterial Cell, One Complete Genome
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Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone
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In-depth Spatiotemporal Characterization of Planktonic Archaeal and Bacterial Communities in North and South San Francisco Bay
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MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree … a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with … This allows for more accurate and detailed comparative genomic analyses.   The Impact There are 900 species of …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … user facility. The staff and resources shifted to offering genomic science capabilities for energy and environmental … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Teredinibacter haidensis sp. nov., Teredinibacter purpureus sp. nov. and Teredinibacter franksiae sp. nov., marine, cellulolytic endosymbiotic bacteria isolated from the gills of the wood-boring mollusc Bankia setacea (Bivalvia: Teredinidae) and emended
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Understanding Wildfire Recovery, Starting in Soil
… A metagenomic look at the soil microbes present a year after a … begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … This work was supported through a USDA NIFA award (2021-67019-34608) to … and operated under contract number DE-AC05-76RL01830. Metagenomic and metatranscriptomic sequencing was performed at …
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Rokubacteria: Genomic Giants among the Uncultured Bacterial Phyla
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Bacterial genome editing by coupling Cre-lox and CRISPR-Cas9 systems
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