Bipartite graphs in systems biology and medicine: a survey of methods and applications
Results
Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons
Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications
Extreme-Scale Many-against-Many Protein Similarity Search
DOE JGI Metagenome Workflow
BioPig: a Hadoop-based analytic toolkit for large-scale sequence data
Empirical Comparison of Visualization Tools for Larger-Scale Network Analysis
Large-scale genomic analyses with machine learning uncover predictive patterns associated with fungal phytopathogenic lifestyles and traits
Exabiome: Advancing Microbial Science through Exascale Computing
Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
