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2022 Progress Report
… Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision The …
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The Expanding Universe of Methane Metabolisms in Archaea
… atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta Gribaldo of the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly available metagenome … working to address some of the most pressing challenges of our time. For more information, please visit  …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those researchers send … the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a … the much more extensive taxonomic and genetic sampling, our study confirmed the affinity between Olpidium and the … working to address some of the most pressing challenges of our time. For more information, please visit  …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… On February 17, 2021, JGI and the Environmental Molecular Sciences Laboratory (EMSL) co-hosted a JGI Engagement: Accessing Resources at Multiple DOE User Facilities with a Single … provide scholarships or financial support, but they provide scientists with accepted proposals free access to their …
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Taking Stock of the Known and Unknown Microbial Space
… global research community.  Published January 17, 2025 in Science Advances , researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … representation. “When it comes to isolate genome data, our real-world touchstones, we’re just scratching the …
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Exometabolomic Analysis of Cross-Feeding Metabolites
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Identifying the Microbial Cleanup Crew at a Superfund Site
… community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency … populations rely heavily on groundwater as their only source of clean drinking water. Over 90% of the PCE in the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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User Executive Committee
… The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their science including technical capabilities offered, proposal …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: … A:  When a proposal is submitted to the JGI, JGI scientists will go over the whole proposal for the technical … working to address some of the most pressing challenges of our time. For more information, please visit  …
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Complete Genome Sequence of Nitrobacter hamburgensis X14 and Comparative Genomic Analysis of Species within the Genus Nitrobacter▿ †
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The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
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