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… team mined more than 8,500 publicly available metagenome datasets generated from sampling sites around the world, including data from several DOE-mission relevant proposals through … to mine, bin and then filter the data for the major capsid protein (MCP) to identify NCLDV viruses. JGI researchers …

… an environment, then co-culturing isolated viruses in eukaryotic  microbial hosts. Lately, researchers have used … approaches. One way of detecting giant viruses in sequence data is read-mapping: using giant virus reference genomes to …

… Czech Academy of Sciences first needed to build a detailed database on the denizens in the soil. While large protein databases, like UniProt, exist, are not specific enough for …

… For a virus with a “head-tail” morphology, this means using proteins on its tail fibers to latch onto a specific target … has looked for DGRs in a broad range of publicly available datasets. They’ve discovered that DGRs are not only … Communications article , the team used publicly available data, approximately half of which was generated by the JGI, …

… gene loss shape the BGC repertoire in most genomes. The BGC data will also soon be contained within the JGI’s Secondary … various bioinformatic tools and comprehensive curated databases, including nomenclatural and genomic information as well as of important descriptive metadata about each strain. “This has been a very fruitful …

… Berkeley National Laboratory (Berkeley Lab). “These data can also be used for machine learning and artificial … adequately capture the vast nature of fungal diversity. Examining databases like MycoCosm , the JGI’s online fungal … capabilities hidden within Earth's most ancient and diverse eukaryotic kingdom.   …

… genes that can be turned on or off by the same regulatory protein. Researchers demonstrated the efficacy and potential … environments are expressed when their functions are needed. Data yielded through RIViT-seq expand the known … sequencing of whole transcriptomes, and the third is determining the 5’-ends by 5’-end sequencing, from which those …

… used in the biotechnology industry to produce enzymes, proteins, and other chemicals. Summary Filamentous fungi are … of DNA Elements (ENCODE) project, which is aimed at determining the activity, expression and regulation of … genes. This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently …

… created by researchers under the direction of Microbiome Data Science Group Lead Nikos Kyrpides at the U.S. … geNomad is now accessible through the National Microbiome Data Collaborative’s EDGE platform. The Impact In order to … of new viruses and plasmids quickly, even in massive datasets. geNomad employs two distinct approaches to …