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ClaMS: A Classifier for Metagenomic Sequences
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DOE JGI Metagenome Workflow
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Terabase-scale metagenome coassembly with MetaHipMer
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Hiroshi Otani
… research activity is focused on developing and implementing new technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … Nucleic Acids Res. 44, 595-607. Otani, H., Lee, Y.E., Casabon, I., and Eltis, L.D. (2014) Characterization of …
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How Microbes Can Protect Plants in Drier Straits
… looking at the efforts of Pankaj Trivedi, whose New Investigator proposal was recently approved through the …
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Dan Rokhsar
… of over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics group, and is past … Council 2009 Friday Evening Lecturer, Marine Biological Laboratory 2000 John Simon Guggenheim Fellow 2000-present …
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Boosting Small Molecule Production in Super “Soup”
… would be transformative at industrial scales. “Cell-free systems have been really powerful at finding ways to … of gene expression through genetic rewiring with CRISPR-Cas9 that enhanced their ability to redirect the carbon in …
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How Filamentous Fungi Sense Food
… sources, these fungi detect which complex chains are available; this information triggers pathways to determine which … developed and optimized by Ronan O’Malley, who leads the JGI’s Sequencing Technologies group. DAP-seq … metabolized in filamentous fungi. The work also suggests a new approach to gene annotation, which then can be explored …
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JGIota: The Algae Nicknamed ‘Chlamy’
… is also a faculty scientist in the Environmental Genomics & Systems Biology Division of the Berkeley Lab Biosciences Area.] …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… and down the highways of the continental United States, occasionally pulling over to the side of the road to collect … is an undesirable trait for domesticated crops because it leads to reduced harvest yields. Over thousands of years, … it was involved in shattering by turning it off. “It’s a new shattering gene variant identified in a natural …
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Applying Viral Genomics Expertise to Understanding the Human Virome
Kyrpides , head of the JGI’s  Microbiome Data Science , leads one project with JGI colleagues Antonio Camargo and … (“contigs”) from thousands of ecologically diverse metagenomics samples. The work is supported by NIH Common … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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