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Nitrogen and phosphorous acquisition strategies drive coexistence patterns among archaeal lineages in soil
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Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem
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Chaparral wildfire shifts the functional potential for soil pyrogenic organic matter and nitrogen cycling
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Environmental matrix and moisture influence soil microbial phenotypes in a simplified porous media incubation
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Genome analysis reveals diverse novel psychrotolerant Mucilaginibacter species in Arctic tundra soils
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The relationship between gene traits and transcription in soil microbial communities varies by environmental stimulus
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Label-free structural imaging of plant roots and microbes using third-harmonic generation microscopy
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Activity‐Informed Network Analysis Reveals Keystone Microbes Shaping Freshwater Ecosystem Function
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species decompose debris, mobilize … — skills that matter increasingly as the climate warms. However, these are complicated interactions to untangle. … of soil RNA — we can access — ‘What are they doing? How do they interact?’” said senior author Francis Martin, a …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… to develop tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the … global researchers on projects related to understanding how the interactions between viruses and their host microbes impact the regulation of global nutrient cycles. The JGI’s …
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Game On: High School Students Drive Everglades Metagenomics Study
… in Florida to discuss a JGI pilot project involving soil sampling in the Florida Everglades to help train the … they noticed while collecting the samples on canoes just how much change had occurred in this region since the images … added a layer of complexity to the project for figuring out how to bring this project together. The class understood …
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Rex Malmstrom
… genetic material, thus bypassing the need to culture these microbes in the lab. After joining the JGI, he formed the … that provides JGI users access to the genomes of uncultured microbes.  His group also handles the Stable Isotope Probing … Couradeau, J.S. et al. 2019. Probing the active fraction of soil microbiomes using BONCAT-FACS.  Nature Comm 10(1) 1-10 …
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