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Uncovering Novel Genomes from Earth’s Microbiomes
… and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the … with a host – with 23,000 MAGs. Modeling A New Path for Metagenomics Researchers Building upon these resources, KBase, a … metabolic models were generated from the GEM dataset, metagenomics researchers might consider branching into this …
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Programs & Platform Leads
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How Filamentous Fungi Sense Food
… use of deletion strains generated by Grant P01 GM-068087 “Functional Analysis of a Model Filamentous Fungus” and that …
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Coevolution of the Ess1-CTD axis in polar fungi suggests a role for phase separation in cold tolerance
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Taking Stock of the Known and Unknown Microbial Space
… said co-first author Dongying Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data … JGI’s Microbiome Data Science group, and Ivanova leads the Functional Annotation team. MAGs significantly expanded the … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Sequencing Technologies
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JGI@25: Strengthening Soybean
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… alumni, and other staff gathered at the Integrative Genomics Building, the JGI’s home at Berkeley Lab, as …
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Nigel Mouncey
… international forums. Breaking the Wall of Environmental Genomics … Jensen, R. O. et al. 2024. Phylogenomics and genetic analysis of solvent-producing … of Actinobacteria with 824 Isolate Reference Genomes. Cell Genomics 2: 100213Nayfach S et al. 2021. A genomic catalog …
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How Maize Makes An Antibiotic Cocktail
Science Program . And the work is part of a  larger CSP Functional Genomics proposal to understand terpene  synthesis and …
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Metagenomic Analysis of Subtidal Sediments from Polar and Subpolar Coastal Environments Highlights the Relevance of Anaerobic Hydrocarbon Degradation Processes
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An Automated Tool for Assessing Virus Data Quality
… limits the ability of researchers to accurately perform functional assessment, host prediction, and phylogenetic … With the virus-host boundary clearly defined using functional annotation methods, it was possible to …
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