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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater ecosystem works.  So a few years ago, when they set out to analyze 500 metagenomes, it …
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SPRUCE-ing Up Science
… longer-term body of work, the experience helped to solidify Lawrence’s interest in pursuing bioinformatics and … your point across as quickly as possible,” he said. After years of practice presenting his science and learning what …
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Computationally Classifying Fungal Lifestyles
… methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, … an algorithm that “taught” a computer how to classify 101 representative genomes of Dothideomycetes, the … of fungi, by lifestyles. The machine “learned” to identify data generated in part through the 1000 Fungal Genomes …
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Cataloging the Microbes that Manage the Health of River Systems
… of river health diagnostic systems to monitor for and identify land use or water quality changes. Summary Rivers are key … the microbiology of watershed systems, they utilized over 160 river water samples collected through WHONDRS, a …
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JGIota: A Surprise for Chloroflexota — The First Flagella!
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Axel Visel
… Dr. Visel also served as JGI Interim Director from March 2016 – March 2017.   … 2021 LBNL Director’s Award for Exceptional Achievement in … pathogenic rewiring of gene-enhancer interactions. Cell 161, 1012-25 Ivanova NN, Schwientek P, Tripp HJ, Rinke C, …
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Alabama A&M Interns Access An Abundance of Knowledge
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A Mentor’s Perspective on Training the Next Generation
… Over the years, hundreds of interns have come to the JGI from all …
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Learning to Look
… databases. In this case, the machine “learned” to identify a certain type of bacterial viruses or phages called … 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 inovirus-like sequences compared to … you’ve found the right features that you can use to identify the inoviruses.” Overhauling the Perception of Inovirus …
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JGIota: Looking Back at Sequencing for Soybeans
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Creating an Energy Market for Miscanthus
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… of the German Science Foundation (grant number DFG PR1603/2-1). The authors acknowledge sampling logistics …
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