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2022 Progress Report
DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National …
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Digging into Microbial Ecosystems Deep Underground
… pretty important role in the cycling of nutrients in these systems.” -Mike Wilkins, Colorado State University GI users … at: the role viral infection may play in other natural ecosystems. The video complements a recently published paper …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
Program Ellen Dow and Elisha Wood-Charlson for the DOE Systems Biology Knowledgebase (KBase) Ian Blaby for the JGI …
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Igor Grigoriev
… major initiatives and more.  … BA/MS in Biophysics, Moscow Engineering Physics Institute, Moscow, Russia PhD in …
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Effects of Polar Light Cycle on Microbial Food Web
… nutrient cycling that evolved separately from other similar systems, and offers new clues into a unique environment in … environments occupy more space on Earth than any other ecosystem. Therefore, understanding the microbial activity that … many researchers for nearly five decades. In these frigid systems, where organisms higher up in the food web like fish …
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Virus-Microbe Interactions of Mud Island Mangroves
… work was overseen by Susannah Tringe, head of the Microbial Systems group. He also worked with Simon Roux and David …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
Internship co-founder Axel Visel and UC Merced Quantitative Systems Biology professor Carolin Frank reflected on the … and a teaching assistant for the UC Merced Quantitative and Systems Biology department.   Jonelle Basso , a JGI research …
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JGI@25: Solving the Mystery of the Missing Oil
… & Environment Meeting: “What we wanted to do was apply a systems biology approach to the oil spill, looking at … models for cellular properties, communities and ecosystems.” Building off multiple collaborations, Lab …
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Rex Malmstrom
… analysis strategy for stable isotope probing metagenomics. mSystems 8:e01280-22. Volland et al. 2022.   A … A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators.  PNAS 116 (41), …
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JGI Hosts GPU Hackathon in May
… sure our computational workload can leverage future HPC systems – our data and compute challenges aren’t getting any …
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Introducing New Members of the JGI User Executive Committee
Pawlowska, who studies fungal-bacterial symbiotic systems, noted that she would like to help advance JGI …
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Scaling Up Existing Skill Sets
… of the internship, 4th year PhD student in Quantitative and Systems Biology Mentor: Guohong Wu, Plant Comparative … Class Year: 2nd year graduate student in Quantitative and Systems Biology Mentor: Ernst Oberortner, Functional …
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