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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… precise gene targeting in the genome in the November 2025 issue of The Plant Cell. Auxenochlorella is an allodiploid … biomaterial manufacturing.  Summary Auxenochlorella UTEX 250-A provides an unprecedented foundation for metabolic … Scientists have already used this alga to understand how genes with unusual structures work in green algae. The …
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Yasuo Yoshikuni
… has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the power of … and applications. This program has supported over 250 projects since it started. At the JGI, Dr. Yoshikuni also … Education …
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Ian Blaby
… carbon metabolism in cyanobacteria Nature Communications 15(1) 3167. 2024 Simirenko et al ., gRNA-SeqRET: a universal … by coupling Cre-lox and CRISPR-Cas9 systems. PloS one. 15: 11. 2020 Blaby & Cheng, Building a custom high-throughput … assembly—present and future challenges. Synthetic Biology . 5: 1. 2020 Nguyen et. al., ManiNetCluster: a novel manifold …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … that could help crop breeders and researchers predict how crops and model organisms may evolve.  Determining the …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… ZW rather than ZZ encodes for females. To better understand how sex determination works in shrub willow, researchers … response regulator that was expanded in a palindrome and shown to be undergoing gene conversion in willow. This gene … by the NSF Dimensions of Biodiversity Program (DEB-1542509 to S.D., DEB-1542486 to LBS, and DEB-1542599 to …
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Cultivating Symbiotic Antarctic Microbes
… researchers have been able to gain further insights about how microbes have adapted to thrive in polar ecosystems. The … successfully cultured two strains of Nanohaloarchaeota and showed they required cell-cell contact with the Antarctic … dhesion and  r estriction  e ndonuclease domains—of up to 8,500 amino acids in length. These were actively synthesized …
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John Vogel
… 11 (1), 1-16  https://doi.org/10.1038/s41467-020-17302-5 Varoquaux, et. al.N. 2019 Transcriptomic analysis of … biotic and metabolic responses. Proc. Natl. Acad. Sci. 116 (52) 27124-27132 Sasse, et. al.J. 2019 Multilab EcoFAB study shows highly reproducible physiology and depletion of soil …
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Graduate Students Get Thesis Research Opportunity at the JGI
… of the latest call , a total of 70 graduate students from 52 universities were selected to carry out part of their … launch a pilot project and begin the work of understanding how engineered environments contribute to greenhouse gases,” …
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Doubling Down on Known Protein Families
… to see beyond the beam — worse, they didn’t even know how big the room is.  A new study  published online Oct. 11, … organisms, but we still aren’t sure of their function.  However, if a gene in the community doesn’t match any of the … we’ve already defined.  “A huge percentage — around 30–50% of the protein families that we knew so far — still does …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… in learning more about the fungal endophytes of soybean and how they deter two significant pathogens, the soybean cyst …
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Taking Stock of the Known and Unknown Microbial Space
… to the global research community.  Published January 17, 2025 in Science Advances , researchers at the U.S. Department … into over 1.8 million bacterial and archaeal genomes to see how much of their diversity we've actually captured,” said … the known diversity of microbial genomes in the datasets, however, the team added that this information is still …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… physiologically and enzymatically, with descriptions of how their activities influence biochemical reactions. For … new GEBA-Actino genome sequences were combined with nearly 5,000 publicly available ones and 1,100 metagenome-assembled …
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