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… , Susannah Tringe , and Tanja Woyke  were part of a “big data” mining effort reported in  Nature Biotechnology that … on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Nikos Kyrpides and  Simon Roux are part of … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

… mass spectrometry approaches and model laboratory ecosystems (EcoFABs). … Trent Northen is the Metabolomics … Populus across genotypes and environments. 2024 Nature Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  … microbiome science through standardized fabricated ecosystems. Nature Methods (16), 567–571 (2019) doi: …

… how these changes affect the dynamics and functioning of ecosystems. She leads a recently approved CSP New Investigator … also interested in developing or improving bioinformatics tools that can help with dataset analysis, as well as how they can be shared with and …

… of large amount isolate genomic and metagenomic data stored in Oracle databases, Berkeley DB and files in various formats. …

… the collective power of more than 26,000 microbiome datasets, all accessible through the publicly available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully crafted the Novel … environment — whether that be soil, animal hosts, marine ecosystems, etc.  “So, they must be doing something interesting …

… and combining the information with previously published datasets. The work was  recently published in the journal  … “This represents the largest integration of single-cell datasets in plants and provides a foundation for still … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

… metagenomes. He also works on automating intra-department data exchange and assists with large scale computations on …

… nonpolar metabolite analysis, creation of large metabolite databases by running 1000s of metabolite standards, and … custom software for integrating metabolomics with genomic data (MAGI) for functional annotation and identifying …

Mo Kaze, UC Merced JGI Mentor : Susannah Tringe, Microbial Systems Group “Everyone here is very kind and really open to … helpfulness and patience of my JGI PIs, having lots of data to play around with.” …

… as a faculty affiliate in the Environmental Genomics and Systems Biology Division of Lawrence Berkeley National … of enzymes. It’s useful to differentiate these enzyme tools into two groups: core metabolism and specialized … screwdrivers in a toolkit. This way, these important tools are always around, regardless of malfunction or …