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Analysis of Porphyra Membrane Transporters Demonstrates Gene Transfer among Photosynthetic Eukaryotes and Numerous Sodium-Coupled Transport Systems      
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Contrasting Community Assembly Forces Drive Microbial Structural and Potential Functional Responses to Precipitation in an Incipient Soil System
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… determination. Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and … ecosystem,” said Salamov, one of Wint’s mentors and a data scientist at the JGI. Previous studies were conducted … predictor of gene expression levels using machine learning tools. “This was very exciting to see how Rhondene not only …
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A Natural Mechanism Can Turbocharge Viral Evolution
… has looked for DGRs in a broad range of publicly available datasets. They’ve discovered that DGRs are not only … level. Scientists might then harness them as molecular tools for research and industry applications. Summary In … and through a Challenge Grant from the California NanoSystems Institute at the University of California Santa …
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Alabama Agricultural & Mechanical University Internship Program
Alabama Agricultural & Mechanical University and the Joint Genome Institute. AAMU students spent two months in …
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User Support Analysis Group
… for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work …
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… that can’t be cultured by analyzing and then extrapolating data obtained from environmental samples — to identify over … coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias … and … that was really the foundation for many of the tools that are available these days and that are widely used …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … in their neighborhoods and nearby forests with the right tools to track infection. The parallel development of the … large-scale “citizen science” project to generate real-time data for modeling and predicting the spread of a plant …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… early stages, so I can begin biological analysis of the data sooner than I anticipated.” In her message, Dumont … graduate intern): In her final year in the Quantitative & Systems Biology PhD program at UC Merced under the … the initiation of the Venomous Host-Microbe Consortium. Data produced during Ul-Hasan’s JGI internship led to her …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … and analyze the single nuclei and spatial transcriptomics data this work leverages. These experiments focused on two … grasses, like sorghum and switchgrass. We’re optimizing systems now, so that we can get those working,” Cole said.  …
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JGI Scientists Pen Genome Watch Articles
Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … metabolism . And postdoctoral researcher Sara Calhoun, data scientist Stephen Mondo, and  Fungal and Algal program … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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