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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… funded by the National Science Foundation (NSF) that supports underrepresented minorities in science, technology, … early stages, so I can begin biological analysis of the data sooner than I anticipated.” In her message, Dumont … the initiation of the Venomous Host-Microbe Consortium. Data produced during Ul-Hasan’s JGI internship led to her …
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When “The Blob” Made It Hotter Under the Water
Data from marine heatwave event may foreshadow climate … in marine microbial communities. Using the JGI-generated data, Sachia Traving, a former postdoctoral fellow in the … Joint Genome Institute, an Office of Science User Facility, supported by the Office of Science of the U.S. Department of …
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JGI-KBase Panel at SACNAS
… to get credit for their scientific contributions through data citations, authorship, and presenter opportunities. …
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JGI on the 2021 Highly Cited Researchers List
… multi-institutional research team that combined field data with a reference switchgrass genome to associate … hosted two JGI Engagement Webinars promoting the JGI fungal data portal MycoCosm and the algal portal PhycoCosm. … global cities. He and his colleagues used an extensive JGI database to investigate viruses detected in the samples. …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… switchgrass genome sequence is available on the JGI plant data portal Phytozome. The combination of field data and genetic information has allowed the research team … biomass-based fuels.   … P. virgatum on Phytozome … Plant Dataset …
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Biotech Partners Summer Intern Co-Authors NAR Paper
Research publication. The paper describes the version 6 data updates and feature enhancements to the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K Reddy, … he curated several small sets of phylogeny, biosample metadata tasks we assigned.”       Click here to watch a video …
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Enlarging Windows into Understanding Gene Functions
Berkeley National Laboratory (Berkeley Lab). And one of the tools that researchers can apply to study the transcription … (cDNA), reducing the amount of time it takes to produce a dataset from months to days and halving the total reagent … these two new methods as a high-throughput JGI capability supported by liquid-handling robotics.” Helps Drive User …
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Streamlining Regulon Identification in Bacteria
… environments are expressed when their functions are needed. Data yielded through RIViT-seq expand the known … S. coelicolor . With results from the research, RIViT-seq data have increased the identification of the number of … these transcriptional regulatory networks. … This work was supported by the U.S. Department of Energy Office of Science …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… team mined more than 8,500 publicly available metagenome datasets generated from sampling sites around the world, including data from several DOE-mission relevant proposals through … National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… biology, single cell and systems biology, omics, and big data science, machine learning for experimental science, … National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation … these challenges.  DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… it, viruses are most likely in your system and in your data, and they’re probably influencing the microbes there,” … In 2016, Nikos Kyrpides at the JGI led a team that combed datasets from around the world, finding over 125,000 partial … its existing Integrated Microbial Genomes & Microbiomes database to include a dedicated section for viruses, so …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… accepted through JGI’s calls. Nearly 200 Terabases of data are expected to be generated for the accepted … or by allowing the generation of preliminary data for a larger study.” … The U.S. Department of Energy … National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation …
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