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Annotation of metagenome short reads using proxygenes
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Transcriptional control of Clostridium autoethanogenum using CRISPRi
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 … the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass spectrometry-based … over 10k samples/year, Dr. Louie and her team work with other JGI scientists in development of new, advanced …
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Crysten Blaby-Haas
… Dr. Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials … Molecular Foundry, a nanoscale research and knowledge-based user facility at Berkeley Lab. She is spearheading the … Science in 2011 from the University of Florida, working with Valérie de Crécy-Lagard on using comparative genomics …
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The Expanding Universe of Methane Metabolisms in Archaea
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly available metagenome data … that methanogenesis is one of the oldest metabolisms, with the first traces possibly at ~3.5 Gy (billion years),” …
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Picking Up Threads of Cotton Genomics
… fields look like popcorn is literally growing on plants, with fluffy white bolls bursting out of the green pods in … hybrids comprised of cotton A and cotton D genomes. A multi-institutional team including researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets
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Inaugural Critical Minerals & Materials Joint Research Portfolio Announced
… 20 proposals were selected by the Joint Genome Institute (JGI) and the Molecular Foundry (TMF) for their collaborative user program. The portfolio of research proposals integrates genomics with nanoscale science, all aimed at accelerating …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
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Tracing the Evolution of Shiitake Mushrooms
… sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks the enzymes … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are … evolution and development of plant polyploids. A multi-institutional team led by researchers at Spain’s Universidad … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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