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A More Intuitive Phytozome Interface
… website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  … are now much more powerful and flexible tools available for building high performance user interfaces and backend data systems. Trying to maintain v12’s codebase and legacy data …
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Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems
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Integrating Experimentation with Data
… Environmental Microbiomes Biodesign and Synthetic Biology AI/ML-enabled Laboratory Automation, Data … worldwide to explore complex biological and environmental systems using advanced experimental and informatic tools at no cost. The …
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Busting the Unbreakable Lignin
… component for the plant, like the brick-and-mortar of a building or the human skeleton. It’s more complex, and poisons enzymes and the  microbes that make them. It’s known that aerobic fungi, like mushrooms, have some ability … Santa Barbara  recently published a paper in  Nature Microbiology offering irrefutable evidence that lignin can, in …
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Simon Roux
… analyzing viral datasets, and the organization of community-building efforts in the field of viral ecogenomics. For this … of viral diversity and virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research Program, … B.S. in Microbiology, Université Blaise Pascal, France M.S. in Data …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… of achieving a predictive understanding of biological systems. “If we could model the genome as if it were a … methodologies developed for natural languages to study genomes,” Wang explained.  And since microbial genomes are … for life's processes, making it a fundamental language of biology — and primed for integration with artificial …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… the conifer needle microbiome. The phyllosphere, which is known as the aerial surface of plants, is a comparatively … the assembly, function, and the behavior of microbiomes to advance their utility across the bioeconomy. The study shows … analysis of mobile genetic elements across all of the metagenomes. Learn more about her time at the JGI here . Bennett …
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Time‐series metatranscriptomes reveal conserved patterns between phototrophic and heterotrophic microbes in diverse freshwater systems
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KARRIKIN INSENSITIVE2 regulates leaf development, root system architecture and arbuscular‐mycorrhizal symbiosis in Brachypodium distachyon
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Spacer2PAM: A computational framework to guide experimental determination of functional CRISPR-Cas system PAM sequences
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Optimized CRISPR Interference System for Investigating Pseudomonas alloputida Genes Involved in Rhizosphere Microbiome Assembly
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Discarded diversity: novel megaphages, auxiliary metabolic genes, and virally encoded CRISPR-Cas systems in landfills
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