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A Plantiful Future: Xiaohan Yang
Laboratory, believes they can. And, what’s more, that using gene editing technology to conscientiously mix traits of different plant species will help us get there. …
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Effects of Polar Light Cycle on Microbial Food Web
… scant, Ace Lake’s bacteria instead go through a boom and bust cycle aligned with light availability. A long-running … cycles. Water samples from Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published …
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Marine Microbe Contains Multitudes
… different lifestyles. The Science The bacterium SAR324 is unusually cosmopolitan. In the ocean’s North Pacific … Boeuf and colleagues set sail on research cruises in 2015 and 2016. At Station ALOHA , site of the 30-years-long … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A Step Toward Controlling Soybean Rust
… is the world’s leading soybean producer , and soybeans are used to produce biodiesel. The fungus  Phakopsora pachyrhizi … 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio , Sebastien Duplessis … to counter soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome …
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Complete Genome of Serratia sp. Strain FGI 94, a Strain Associated with Leaf-Cutter Ant Fungus Gardens
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Complete Genome of Enterobacteriaceae Bacterium Strain FGI 57, a Strain Associated with Leaf-Cutter Ant Fungus Gardens
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Streamlining Regulon Identification in Bacteria
… sigma factors that initiate transcription in bacteria. Using this technology, which combines an in vitro … sequencing, they were able to identify the target genes of 11 sigma factors in Streptomyces coelicolor . The Impact As … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a … to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  … is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI …
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Busting the Unbreakable Lignin
The Impact Traditional methods for breaking down biomass use aerobic methods (those using oxygen) to remove lignin … Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential … (MAO), Institute for Collaborative Biotechnologies grants W911NF-09–D-0001 and W911NF-19-2-0026 (MAO), US Army Research …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… yield and climate resilience of algae — for potential use as biomass or in biomass conversion to biofuel. Summary … dead cells recorded. Samples were taken again at two, six, 12 and 24 hours. By the 24-hour mark, these algae showed … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data quality. The Science Through … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … Additionally, CheckV was able to identify just over 17,000 contiguous sequences (contigs) of proviruses flanked …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started … the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each of them has brought … Nigel Mouncey reflected on how the JGI-UC Merced Intern partnership had become a “model” of sorts at the Lab. “This …
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