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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Volland and colleagues, including researchers at the JGI and Berkeley Lab, LRC, and at the Université des … sediments,” said Woyke, who also heads the JGI’s Microbial Program and is one of the article’s senior authors. The team …
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Expanding Virophage Diversity
… the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science facility, have increased the … more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
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Understanding Wildfire Recovery, Starting in Soil
… after a wildfire — and why they thrive — gives forest managers more avenues to bring forests back to full … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful … for User Science (FICUS) initiative . In this program, researchers leverage the capabilities of more than …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … crops. For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be a Flagship Plant. By … Berkeley Fellowship and NSF Graduate Research Fellowship Program Grant DGE 1752814. K.K.N. is an investigator of the …
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Computationally Classifying Fungal Lifestyles
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … in Mycology . This work was enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have …
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Accelerating Metagenomics Discoveries with Deep Learning
… the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … such as  Mash and  BBsketch , whose lead developer is JGI software developer Brian Bushnell, no alignment-free … order to vectorize protein sequences. Sevim is part of the JGI Genome R&D Group and is one of more than 100 scientists …
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Forming Scientific Connections and Building Community
The 11th cohort of JGI-UC Merced interns pick highlights from their summer … from UC Merced through their long standing internship program. In just two months, the students participated in … Also, there’s always a better way to do something.” Mentors Daniela Cassol, Jeff Froula & Ed Kirton Project: “ …
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Meeting Report: “Metagenomics, Metadata and Meta-analysis” (M3) Workshop at the Pacific Symposium on Biocomputing 2010
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A One-Stop Shop for Analyzing Algal Genomes
… and understand. A team of researchers led by Algal Genomics Program lead Igor Grigoriev and data scientist Alan Kuo at … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Acids Research journal. The genome portal reinforces the JGI’s new strategic focus on exploring algal biology, …
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A One-Stop Shop for Analyzing Algal Genomes
… and understand. A team of researchers led by Algal Genomics Program lead Igor Grigoriev and data scientist Alan Kuo at … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Acids Research journal. The genome portal reinforces the JGI’s new strategic focus on exploring algal biology, …
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A Complex Confection Decoded: Sugarcane Reference Genome
The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … The work was partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference sequence of …
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