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Connecting chemical and protein sequence space to predict biocatalytic reactions
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JGI announces first round of 2023 New Investigator awardees
… our tools with a widening circle of researchers. That’s why twice each year we look for novel research projects — …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… first time, the sex chromosomes of shrub willow have been sequenced with sufficient resolution to analyze their … located at Lawrence Berkeley National Laboratory. The JGI sequenced the shrub willows through the  Community Science … it a plausible mechanism for sex determination in these two species and, perhaps, more generally. …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… Office of Biological and Environmental Research “There are two kinds of scientific revolutions,” Ari Patrinos opened … so there was quite a bit of resistance to use resources to sequence it,” Patrinos said. After many more meetings and … idea was to put together a ‘Best of the Best’ genome sequence list, which I found utterly frustrating and …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. Last year, the JGI surpassed three Petabases of data sequenced — that’s three-quadrillion base pairs of DNA sequence! To meet this “ data tsunami ,” as Kathy Yelick of …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… leakage from a local dry-cleaner. Researchers  identified two bacteria,  Dehalococcoides mccartyi and  Dehalobacter … and 2010. DNA was extracted from the samples that were sequenced by the U.S. Department of Energy (DOE) Joint … at the NRAP site. However, the microbial strain’s genome sequence was not in IMG/M when the NRAP samples were …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… conventional food crops. For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be … diseases are well known to be partially due to the DNA sequence that makes up an individual’s genome. The genes of … and Extension Center (KARE) in Parlier, Calif. They grew two sorghum cultivars under three watering conditions, and …
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JGI@25: Building a Better Bean
… of the JGI; and Scott Jackson of the University of Georgia sequenced and analyzed the genome of the common bean. That … Africa. For smallholder farmers — those with less than two hectares of land — common bean is often a food at every … farmers and a commercial crop for large producers. The team sequenced and assembled a 473-million basepair genome of the …
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JGI on the 2020 Highly Cited Researchers List
… that  released a very high quality reference genome sequence of green millet ( Setaria viridis ) in  Nature … from samples provided by more than 200 scientists and sequenced by the JGI through the  Community Science Program, … they  conducted a large-scale comparison of 135 fungal sequenced genomes to understand how plants and fungi …
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Genome Sequence and Analysis of the Flavinogenic Yeast Candida membranifaciens IST 626
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Genome Sequences of 42 Bacteria Isolated from Sorghum bicolor Roots
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Chromosome assembled and annotated genome sequence of Aspergillus flavus NRRL 3357
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