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Tracking the Origins of Methane-Producing Microbes
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the discovery of a novel archaeum from … lineages. The archaeal genome was detected in samples collected by Stephen Quake’s team at Yellowstone … spring. The researchers applied mini-metagenomics to these samples by sorting the microbes into small pools of cells …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … root, leaf and rhizosphere (soil surrounding the root) samples from the plants at the same time each week over the … at the KARE field site and then collect and process the samples starting at 10am Pacific time. JGI researchers …
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An Automated Tool for Assessing Virus Data Quality
… are being recovered and identified from environmental samples (metagenomes). However, the quality and completeness … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and guidelines for providing the minimum amount of information for an uncultivated virus genome. CheckV has …
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Mining Metagenomes for Cas Proteins
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. The sequences were then … the event of a new infection, the microbes use the genetic information encoded in CRISPR sequences to target the virus … Scientific Computing Center , a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory. …
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The More the Merrier: Making the Case for Plant Pan-genomes
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … individual genome highlighting the fact that the genetic information in a single reference genome is insufficient. … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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JGI-UC Merced Interns Share Their 2021 Experiences
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… lab in Mulford Hall. There, they conducted DNA analyses of samples collected on recent SOD Blitz expeditions. The team …
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Doubling Down on Known Protein Families
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of these communities via whole genome sequencing of the samples, without being able to distinguish which gene … genes were typically discarded from any analysis as useless information. These represent the ‘unknown unknowns’ because …
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Tanja Woyke Elected to American Academy of Microbiology
… honor,” said Axel Visel , JGI Deputy for Science Programs. “It clearly speaks to the enormous impact her … to have scientists of Dr. Woyke’s caliber support the JGI User community in accessing our resources and help them to … and environmental genomics.” Along with Woyke, two JGI users were also elected to the AAM: fungal researcher Jason …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… ecosystems. Viruses rarely grow well in environmental samples brought back to a lab, because they often need … to replicate. Sequencing genetic material directly from samples sidesteps these challenges, since it doesn’t require … existence. Along with highlighting the viruses in a given sample, metagenomics shed light on another key aspect of …
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Integrating Experimentation with Data
… of Energy (DOE) Office of Science national scientific user facilities dedicated to advancing research in bioenergy …
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Steven Wilson
… and our institutional website.   Mr. Wilson brings a user-centered approach, an ability to work with others to … Department to develop software that pushed instrument run information directly into the database rather than depending upon error prone, manual input by the users in a web browser interface. Mr. Wilson then served as …
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