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The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … viruses,” said Simon Roux , a JGI scientist and one of the project co-leads. “But same as DNA viruses, RNA viruses … emphasized, the contributions of the numerous JGI science users in collecting and submitting their microbiome samples …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI has established a portfolio of microbial hosts that users can select to be engineered. “Piloting access to this … the amount of DNA that can be inserted at a time. In a  project detailed in  ACS Synthetic Biology , Yoshikuni and …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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Differential effects of press vs. pulse seawater intrusion on microbial communities of a tidal freshwater marsh
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A Grass Model to Help Improve Giant Miscanthus
… allows Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy feedstock crops such … DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … copies, will help researchers improve Miscanthus breeding programs. The team also sequenced genomes of numerous wild …
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Triggering Morel Fruiting
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on just how morel fruiting is … source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every … by the black morel, as well as the gene-expression programs encoding the biochemical processes unveiled by …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … to analyze the resulting metagenomic data. (Data from the project are available on the  JGI Genome Portal .) The team … ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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Improving the Cacao Genome and Phytozome
… Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the plant team … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … new ways of harnessing large datasets, JGI researchers and users are looking for ways of making these experiments more … labs, as well as Pett-Ridge’s group, will assemble input materials, with eight or nine different teams then …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… the primary author on this publication and drove the entire project, Visel explained. She continued working virtually … Practical Applications for Fungi Wint began working on the project that culminated in this publication during her summer internship in 2018. She selected one of the projects posted by JGI fungal researchers, Igor Grigoriev …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … keeps its DNA more organized. “The big surprise of the project was to realize that these genome copies that are … at the JGI, Gros allowed him to continue research on the project. At the JGI, Volland began studying Ca. T. magnifica …
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