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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… heavily invested in being the bridge to help scientists and researchers achieve their analysis goals. Offering this tool … cell’s genome is missing from the final assembly. So while researchers are confident all the DNA sequences came from … from complete.  In 2021 , scientists at St. Jude Children’s Research Hospital developed a new method of genome …
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Supercharging SIP in the Fungal Hyphosphere
… novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a … Applying this method to the study of a particular fungi, researchers identified novel interactions between bacteria … Later, their DNA can be tested for the isotope, which tells researchers which microorganisms used the labeled substance …
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First Monoploid Reference Sequence of Sugarcane
… the highly polyploid sugarcane, an international team of researchers has successfully assembled a first monoploid … of the world’s sugar, which is of interest to bioenergy researchers who want to develop sustainable alternative … (JBEI), the JGI was part of an international team led by researchers from the French Agricultural Research Centre for …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… early collaborations that could help crop breeders and researchers predict how crops and model organisms may … he can use what they’ve developed here to further future research and answer complex questions. …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… remain silent under standard laboratory conditions. Researchers with the Department of Energy (DOE) Joint Genome … efforts support the DOE’s Biological and Environmental Research program’s efforts in advancing genome-based biotechnology.  Researchers studying Streptomyces species or related …
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Eelgrass Proves to Be Much Younger Than We Thought
… eelgrass adapted and evolved throughout its history. Their research, published in  August 2023 in  Nature Plants , was … and Portugal. In order to develop a timeline like this, researchers would normally craft a genetic clock based on … another. This change occurs at a predictable rate, enabling researchers to use the genome assembly to calibrate their …
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Building Wet and Dry Lab Skills
… students coming to the DOE Joint Genome Institute for research and training experience funded by a DOE training …
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Webinar: MycoCosm Tutorial
… For model fungi, not sequenced by JGI and adopted by large research community we  are trying to link to the community … contact us if you would like to share your data with other researchers 13.  Q: Is it possible to download predicted … of 142 of them that are not only conserved across large phylogenetic distances, but have an unknown or poorly …
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The fungus that made itself at home
… By comparing genetic information from similar organisms, researchers have gained insights on why the dry rot ( … aggressive capacity to damage the wood in homes, bioenergy researchers have been interested in harnessing the brown rot … , a team led by University of Oslo scientists and including researchers at the Joint Genome Institute, a DOE Office of …
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Fishing for Novel Cellulose Degraders
… specific catches. A similar technique has been developed by researchers led by Tanja Woyke at the U.S. Department of … potential applications to industrial processes. Summary JGI researchers developed a function-driven, single-cell screen … several microbes from known cellulose-degrading groups, the researchers also hooked and were able to reconstruct a …
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Virus Discoveries that Keep Getting Bigger
… isolated viruses in eukaryotic  microbial hosts. Lately, researchers have used culture-independent approaches to gain … into the  genomes of giant viruses. In a new review, researchers from the U.S. Department of Energy (DOE) Joint … environments around the world. Summary In this review, researchers Schulz, Abergel and Woyke summarize insights …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… first time. For years, Elizabeth (Toby) Kellogg and other researchers at the Danforth Plant Science Center (Danforth … Biotechnology . Kellogg and her colleagues, along with researchers at the HudsonAlpha Institute for Biotechnology … sequence. Analysis of these plant genome sequences also led researchers to identify a gene related to seed dispersal in …
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