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The phytoalexin camalexin induces fundamental changes in the proteome of Alternaria brassicicola different from those caused by brassinin
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Defining the Boundaries and Characterizing the Landscape of Functional Genome Expression in Vascular Tissues of Populus using Shotgun Proteomics
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Comparative proteomic profiles of the marine cyanobacterium Trichodesmium erythraeum IMS101 under different nitrogen regimes
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SoyCSN: Soybean context‐specific network analysis and prediction based on tissue‐specific transcriptome data
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Comparative and transcriptional analysis of the predicted secretome in the lignocellulose‐degrading basidiomycete fungus Pleurotus ostreatus
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Machine learning-based prediction of activity and substrate specificity for OleA enzymes in the thiolase superfamily
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … Congratulations to Jennifer Doudna of the University of California (UC), Berkeley and Lawrence Berkeley National … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Micro-Scale Applications Group
… The Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of … of single-cell genomes and directly link functional information with individual cells. Research Team    … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms oil-producing alga into a powerful …   The Science Scientists have fully decoded the genome of an oil-producing green alga, and demonstrated precise … support from the Gordon and Betty Moore Foundation (to SSM) for the work on  A. symbiontica (9203). RJC was supported …
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What Happens Underground Influences Global Nutrient Cycles
… projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user … of the JGI’s Flagship genomes. She and her colleagues have generated a high-quality, phenotyped mutant library in …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address climate change: pulling … soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in … interaction up close, using RNA sequencing to understand gene expression: one of the first cross-kingdom …
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JGI Early Career Researchers Featured in mSystems Special Issue
… In a special issue of mSystems , out May 14, 2019, JGI researchers are among … sorting (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was … what’s been achieved thus far based on computational predictions, and future directions integrating computational …
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