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Comparative proteomic profiles of the marine cyanobacterium Trichodesmium erythraeum IMS101 under different nitrogen regimes
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Phosphate limitation responses in marine green algae are linked to reprogramming of the tRNA epitranscriptome and codon usage bias
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) … participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Metagenomes and Metagenome-Assembled Genomes from Microbiomes Metabolizing Thin Stillage from an Ethanol Biorefinery
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Igor Grigoriev
… Grigoriev joined the JGI in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical … of Plant and Microbial Biology at University of California, Berkeley. He contributed to the Human Genome Project … led annotation and analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the JGI Fungal …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent … scientists have shown at least two microorganisms from different phyla are capable of methanogenesis. Using … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for Computational Genomics, and led the computational … and Development after his research interests shifted from condensed matter physics to computational biology, … AB in Physics, Princeton University, NJ MS in Theoretical …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral … 2019 in Nature Communications , two research teams joined forces and data sets to describe bacterial genomes for … analyzed single amplified genomes of Margulisbacteria from marine samples. The research teams opted to collaborate on a …
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Specialized proteomic responses and an ancient photoprotection mechanism sustain marine green algal growth during phosphate limitation
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The metagenome of the marine anammox bacterium ‘Candidatus Scalindua profunda’ illustrates the versatility of this globally important nitrogen cycle bacterium
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Fourteen genome sequences from bacterial, environmental isolates from the Cotton Glacier stream, Antarctica
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on … ripples through the trees in his backyard. Originally from northern California and one of the first students to … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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