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A Collaboration to Improve Plant Genome Annotations Across Species
… JGI Plant Gene Atlas is a huge updateable transcriptome resource spanning diverse plant species. It was developed to … resource like this important to the field of plant genetics/genomics? Avinash: Having a better handle on the gene … one of which is sweet sorghum Rio from a JGI Community Science Program project and another is Lupinus albus from a …
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JGI announces 2024 New Investigator portfolio
… The JGI is eager to work and share our tools with a widening circle of researchers. That’s why … — through the New Investigator call under our Community Science Program . Below find a list of researchers whose … of desert grasslands to the metabolic savviness of microbial ecosystems at the forest floor and along ocean …
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JGI Announces 2025 New Investigator Portfolio
… Yaqi You, Yong Zhang and Zhiping Zhong. (All images courtesy of the researchers) Each year, the JGI searches for … The New Investigator call , part of our  Community Science Program , allows us to work and share our tools with … and environmental DNA sequencing to explore microbial and plant interactions across unique ecosystems, …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… potential for AI-driven studies of energy metabolism. The Science Researchers produced nearly 10,000 new annotations … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Berkeley Lab, addressed this gap in … standardized structure of the dataset position it as a resource for AI-driven approaches to predicting fungal …
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Protocol for single-cell isolation and genome amplification of environmental microbial eukaryotes for genomic analysis
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An Automated Tool for Assessing Virus Data Quality
… assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and … the genomes of these viruses and associate them with their microbial hosts. However, assembling viral genomes from … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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MGM Workshop at Fisabio Summer School 2026
… professionals of biology, biomedical research, the health sciences and related fields who are interested in learning … and sharing concepts, tools and research results in genomics, metagenomics and the human microbiome. The … will be devoted to training in the use of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by …
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Georg Rath
… the JGI, he has been working on the boundary of life science and computational science with notable stops at … people and transparency and a staunch supporter of open source development processes. This expresses itself in the … from JGI’s science and production sequencing programs. …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into many more samples and refined our methodology,” Neri said. “Our team grew and so did the …
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Katherine Louie
… biological and environmental samples in support of user science.  Capabilities offered by the platform are a result … Discovery. 2020.  Reference Module in Chemistry, Molecular Sciences and Chemical Engineering.  DOI: … Rocha UN, Shi S, et al. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in …
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The genomic standards consortium: bringing standards to life for microbial ecology
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IMG 4 version of the integrated microbial genomes comparative analysis system
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