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iPHoP: A Matchmaker for Phages and their Hosts
… computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do … nutrient cycling, or carbon sequestration. Summary Existing programs use a variety of approaches to match a virus with a … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National …
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Fishing for Novel Cellulose Degraders
… hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly … enzyme activity assay. The work was  reported in  The ISME Journal . While the screen caught several microbes from known … this microbe. The work is an example of how function-driven genomics, which Woyke and her colleagues define as “any form …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… for developing ​​bio-based industrial products.    The Science Scientists have fully decoded the genome of an … resilience and diversifying industrial feedstock sources. … was supported by the Department of Energy (DOE) Office of Science, Biological and Environmental Research program under …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on … graduate student working with  Susannah Tringe , JGI’s User Programs deputy and head of the Microbial Systems group …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… bioeconomy, leveraging partnerships to advance foundational science, creating opportunities for the global research … has released its newest 5-Year Strategic Plan: Innovating Genomics to Serve the Changing Planet (download a copy at … and stimulate a bioeconomy, where renewable, biological resources drive processes, products, and services.  Advancing …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … about a multi-year study his student conducted involving fungal rust pathogen resistance. Just as the common gardens …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to … But not all scientists have the expertise and resources to do DNA design and synthesis work. This is where … their collaborations. One review article in the collection, Genomics-enabled analysis of specialized metabolism in …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… Michael Brandt (Operations Deputy), Horst Simon (Science Deputy), Jeff Blair (Chief Laboratory Counsel) and … in his event remarks. “I feel that is something crucial to our success, and Ray has been that. That person needs … to the ever-shifting landscape of funding Federal for programs, noted that “Ray is someone who just will get it …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… more complete genomic results from single cells. The Science Studying the  genomes of microorganisms is … key to better understanding all the organisms that live in our immediate microbiome. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered that the candidate … evolutionary consequences. A previous study conducted by our research team surveying the genomic and phenotypic … across the species. These are primarily tetraploids (4X or four copies of the genome) and octoploids (8X or eight copies …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… at the DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National … their expertise in developing and managing public viral genomics resources such as analytical tools and data repositories to two … working to address some of the most pressing challenges of our time. For more information, please visit  …
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