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Accelerating Metagenomics Discoveries with Deep Learning
… learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered from whole samples rather than … recognition: for example, a camera’s ability to recognize your face and distinguish it from your friend’s. Biologists … in order to create more useful tools for the bioinformatics community. Other work presented at the workshop included how …
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Matt Blow
… as a project scientist and then as a research scientist on projects to develop functional genomic technologies and to … the lead of the User Support Analysis group. The group performs custom analysis and develops automated pipelines for analysis of resequencing, transcriptome, epigenome and other functional …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… such as heat waves, droughts and floods. The planet’s resources are being stretched by a growing human population and … nearly 400 root and leaf samples and helped analyze the sequencing datasets. The results from the first year showed … Berkeley Fellowship and NSF Graduate Research Fellowship Program Grant DGE 1752814. K.K.N. is an investigator of the …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and colleagues, including … a co-first author on the study, performed the 16S rRNA gene sequencing to identify and classify the prokaryote. “I … the importance of supporting fundamental, creative research projects to advance our understanding of the natural world,” …
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Short sequence motifs, overrepresented in mammalian conserved non-coding sequences
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Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta
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Draft Genome Sequence of Coniochaeta ligniaria NRRL 30616, a Lignocellulolytic Fungus for Bioabatement of Inhibitors in Plant Biomass Hydrolysates
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Intraspecific comparison and annotation of two complete mitochondrial genome sequences from the plant pathogenic fungus Mycosphaerella graminicola
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Complete Genome Sequence of Lactobacillus buchneri NRRL B-30929, a Novel Strain from a Commercial Ethanol Plant
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… challenges they overcame, and what new skill sets they look forward to taking back to school.  The interns from this … valuable because in this time that I’ve been in my PhD program, I’ve been really focused with academia. And so this … the same problem. We can research on the internet and share our findings. And that was really important for me.  Tyrome …
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The Expanding Universe of Methane Metabolisms in Archaea
… atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta Gribaldo of the … to environments found on early Earth.”  Through the JGI Community Science Program, Inskeep and McKay recovered … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Gut Fungi: Unexpected Source of Novel Chemicals
… — an energetically expensive feat thought to be too costly for them. The Science Anaerobic fungi, which die in the … can breathe oxygen — just like we do. Oxygen is a rich source of energy, and because anaerobic fungi can’t harness … a National Science Foundation Graduate Research Fellowship Program under Grant No. 1650114, a UCSB Graduate Division …
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