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Forest Fungi, Seagrass, and a New View of Symbiosis
Three stories of JGI-supported research, connected to nutrient cycles. …
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A new view of the tree of life
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New Tricks with Old Bones
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Calculating the Costs of Multiple Switchgrass Gene Copies
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered … (in this case, a plant’s complete genetic makeup) and 10 common gardens. We discovered that 8X populations have …
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A Collaboration to Improve Plant Genome Annotations Across Species
… improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently … Avinash: In the initial planning phase, there were about 10 groups that came together to standardize the experimental … subscriber? Avinash: It has been publicly available since 2018. There were more than 15 citations even before this was …
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Disclaimer
… of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. Accordingly, the U.S. Government retains a … any statement of authorship are reproduced on all copies. JGI is not responsible for the contents of any off-site …
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Igor Grigoriev
… in over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he launched scale-up of algal genomics and PhycoCosm … by anaerobic fungi.  Nature Microbiol. 8(4):596-610. Nelson et al (2022) Wildfire-dependent changes in soil … important yeasts.  Proc Natl Acad Sci U S A. 113(35):9882-7. Kohler et al  (2015) Convergent losses of …
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Searching for new branches on the tree of life
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Streamlining Regulon Identification in Bacteria
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … target genes in 11 of those. That work published in Nature Communications on June 17 , 2022, was conducted by … addressed in the study were found to control more than 100 genes, one of which was directly characterized by …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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An Automated Tool for Assessing Virus Data Quality
… uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … of contamination from the host organism. As reported in Nature Biotechnology , a team from the U.S. Department of … DE-AC02-05CH11231. This work was also supported the grant #2016/23218-0 from São Paulo Research Foundation (FAPESP). …
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Genome Project Standards in a New Era of Sequencing
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