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Supercharging SIP in the Fungal Hyphosphere
… The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial … method to the study of a particular fungi, researchers identified novel interactions between bacteria and the fungi. … a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, have developed a …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… chemical factories. They hold genetic blueprints for dozens of complex compounds, but stay largely dormant under … can use to design more efficient microbial factories. Identifying specific genes, regulatory elements and metabolic … (JGI), a DOE Office of Science user facility located at Berkeley Lab, screened dozens of growth conditions and found …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… Ruoxi Zhao and mentor Margot Bezrutczyk Eric Wu and mentor Atif Shahab Edward Lu and mentor Miguel Romero Sean Saki and … And also specifically, it sparked my interest in bioformatics, so that’s what I’m gonna take with me to the … are a little bit stronger in computing, so I was kind of worried coming into the, the internship that maybe I …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… what cost?  A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for … we also hoped to use this unique opportunity to quantify how transitions to higher ploidy could be generating …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer … in their fields. I have learned so much in terms of scientific approach and as a plant biologist, I have learned so … the forefront.” Mentors: Rex Malmstrom, Nandita Nath & W. Berkeley Kauffman Project: “ 16s Sequencing of Barcoded …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… analyzing the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that … oxide). Summary To do this work, the international scientific team led by Petr Baldrian of the Czech Academy of … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory, to create the database. JGI …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a scientific journal is the ultimate achievement. To get to this … that help to explain their work and its impacts at Berkeley Lab and beyond. Last summer, Wint hosted a virtual …
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Products
… Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and … an extensive internal product audit to analyze the scientific value, demand, and costs of current offerings in the … assembled to less than 5kb in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … largest dataset of its kind ever assembled. The team identified 15 core genes shared across all fungi, and found that … Institute (JGI), a DOE Office of Science user facility at Berkeley Lab, addressed this gap in a recent article …
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Expanding Virophage Diversity
… in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … the virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, including … extended the possible virophage genome size range from 13.8-29.3 kilobases (Kb) to 10.9-42.3 Kb. Additionally, the gene …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … Honey bees are invaluable pollinators — cupids of the plant world facilitating the remixing of genes in the … Now, an international team of researchers has identified the major metabolic roles of constituent microbes, …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… and relevance to the DOE’s mission.  Have someone proofread your proposal to make sure the goals, experimental … the 500-gigabase cap and that you don’t request outside of the sample range that’s listed. Q: What are the pros and cons of proposing a truly exploratory small proposal that might …
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