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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies … mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … utilize gene markers across different ecosystems to better understand how nutrients are used and cycled. …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of … and experimented with the fungi and bacteria, while the DOE JGI team sequenced and annotated a host genome (Rm ATCC … This research was supported by the National Science Foundation and the National Institutes of …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an … to produce energy, using a process called fermentation. To better understand the range of bacteria and archaea that … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the direct binding sites of many transcription factors to better understand how nutrients are acquired and carbon is …
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … biology. He holds joint appointments as a Deputy Director at the DOE Joint Genome Institute, Senior Scientist at …
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Charting Progress toward Professional Goals
… back on meaningful lessons from their summer experiences at the JGI Berkeley Lab offers a variety of programs to help … good results, right? So I spent a lot of effort, like building my code base, running jobs that take like two days …
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Disclaimer
… NOTICE Information from this server resides on a computer system funded by the U.S. Department of Energy. Anyone using this system consents to … documents available from this server, neither the United States Government nor the University of California nor any of …
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Partnerships: Myco-Ed
… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based Undergraduate Research Experience (CURE) that consists of coordinated … DNA is extracted from samples, which is then sent to the JGI for genome sequencing, assembly and annotation. …
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Learning to Look
… Machine learning approach significantly expands inovirus … readers need to look for a number of distinguishing features. Several characters may be spotted with a striped … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… A genetic architecture that is characteristic of the sex … of X and Y, and ZW rather than ZZ encodes for females. To better understand how sex determination works in shrub … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Ancient Algae Reveal Secrets of Plant Evolution
… Research uncovers the genetic foundations that helped plants … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … This work was funded by the US National Science Foundation (NSF) CAREER award (DBI-1652164, …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… For the first time, a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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