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… Jasmyn provides bioinformatics tools and analysis support for user science, … and collaboration, she works to develop and improve supporting pipeline efficiency through streamlined workflows, … portability and reliability, thereby accelerating critical insights for the JGI User community. …

… Group helped better-understand what the sulfur-oxidizing, carbon fixing bacterium was doing in the Guadeloupean … the cover of  Nature Reviews Microbiology ,  summarizing insights from three decades of work on giant viruses — … IMG/M Data Portal were instrumental to  a study that looked into how soil viruses , and in particular a chitosanase …

… credits her high school teacher with inspiring her to get into science and wanted to pay it forward. Defining a … to assist them with soil sample analysis for nitrogen and carbon concentrations along with water content. The class … metabolic pathways related to methane production, nitrogen fixation, and dissimilatory sulfite reduction. Presenting …

… Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and … crust, there is a vast ecosystem connected to the global carbon cycle. Archaea are key players in this deep … these complex symbioses between organisms feeds into a better understanding of nutrient cycling across the …

… Molecular Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools that leverage stable isotopes to measure carbon and nutrient flux, and identify microbes assimilating … A: As long as we can harvest the sample, then we can put it into the laser system 7. Q: Can radioactive isotopes be used …

… Monitoring Inter-Organism Interactions Within Ecosystems Latest … such as the Copper River Delta wetland pond, cycle carbon. Using plots at the Harvard Forest long-term warming … with their environment, potentially accelerating soil carbon loss. Orange ribbons mark the heated plots and blue …

… planet’s microbial diversity is immense, yet much of it remains unknown. For more than a decade, researchers around the … collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … environments, actinobacteria play roles in both the carbon and nitrogen cycles, break down plant mass (think …

… A workflow for capturing the genetic make-up of specific uncultivated microbes … collected using fluorescence activated cell sorting (FACS) into smaller, less diverse pools before being subjected to genome sequencing. Various fixation protocols were also tested as part of the method …

… Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. Kaze is part of Mark Sistrom’s lab at … focuses on the roles of microbial communities in wetland carbon cycling and the interactions of plants with their … his project, Rambo aims to develop the omics methodologies into workflows with the DOE Systems Biology Knowledgebase …

… Mini-Metagenomics Approach Helps Identify Novel Archaeal … production. They are thought to use billions of tons of the carbon dioxide trapped in biomass each year to do so. As … mini-metagenomics to these samples by sorting the microbes into small pools of cells that were then sequenced …

… metabolites for multiple applications. Despite advances in sequencing technologies and computational methods in the … in regulating nutrient cycles, as well as gaining insights into potential applications they may have in a wide range of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …