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A Plant Root Atlas for Tracking Developmental Trajectories
… of British Columbia, Philip Benfey at Duke University and Uwe Ohler at   Humboldt Universität zu Berlin   has developed an atlas that maps gene expression patterns in the  … that could help researchers track cell development and how they determine identity, as well as the roles played by …
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A Complex Confection Decoded: Sugarcane Reference Genome
Sugarcane was the last major crop without a reference quality … for  biofuels and other bioproducts. Finally, understanding how brown rust disease resistance works in sugarcane could … a full representation of the diversity present in R570 but shows the genomic effects of breeding practices that …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… “but we really first heard about the JGI synthesis grant during a presentation that [DNA Synthesis Science Head] … the Functional Genomics (formerly DNA Synthesis) call, and he noted the data had driven his lab’s focus on guide … proposals by a consortium. The consortium looked at how different bioenergy relevant plants can produce …
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Introducing New Members of the JGI User Executive Committee
… new members to the JGI User Executive Committee (UEC) : Roland Hatzenpichler of Montana State University, Teresa Pawlowska of Cornell … but use-restricted] exist on [the JGI data portal] IMG or how to deal with situations in which they inadvertently …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative … Most organisms use oxygen to convert food into energy. However, in environments with little or no oxygen, life had … of these microbes. The Impact This study illustrates how the research community brings together the data …
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to … or 5mC. In many organisms, 5mC is an important piece of how they regulate their genomes, but is not well understood …
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Products
The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, DNA synthesis and pathway engineering Mass spectrometry based metabolomics …
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Alabama A&M Interns Access An Abundance of Knowledge
In 2024, the DOE Joint Genome Institute and Alabama A&M University piloted an internship program to bring students to the JGI for … CRISPR Cas9 knockout mutants to observe and investigate how transporter proteins regulate the production of root …
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Creating an Energy Market for Miscanthus
What grass is a prized ornamental and a bioenergy plant? Meet Miscanthus , an attractive addition to your garden and a …
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Tanja Woyke
After studying the mechanism of action of antifungal natural products and their derivatives during her Ph.D. in Microbiology at …
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The JGI Data Portal: Improving User Experience
The human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in … for various data types or taxa An at-a-glance view of how much data you’ve selected for download, as well as …
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Streamlining Regulon Identification in Bacteria
RIViT-seq technology could speed up associating transcription factors with their target genes. The Science … (Berkeley Lab). Transcription factors control when and how genes are turned on or off, so transcriptional … including activators, repressors and sigma factors. However, currently the process for identifying the …
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