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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… terabytes of data with MetaHipMer2. And the National Energy Research Scientific Computing (NERSC) has another … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …
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Accelerating Metagenomics Discoveries with Deep Learning
… assemble and interpret. The workshop aimed to showcase how researchers are utilizing deep learning to automatically … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the United States, and …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… yet much of it remains unknown. For more than a decade, researchers around the world have collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … over 80,000 biosynthetic gene clusters (BGCs) for synthesis of secondary metabolites, in line with the JGI’s …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… in New Mexico via leakage from a local dry-cleaner. Researchers  identified two bacteria,  Dehalococcoides … ethene. Applying genome sequencing and analysis, the researchers identified other bacteria and microbial … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Tracking the Origins of Methane-Producing Microbes
… in the Proceedings of the National Academy of Sciences , researchers at Stanford University, the Chan Zuckerberg … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the … Yellowstone National Park’s Obsidian Pool hot spring. The researchers applied mini-metagenomics to these samples by …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Grimwood heads the Library Construction group for the JGI Plant Program . Her collaborations with the JGI began … plant genomes. She has appeared on the annual Highly Cited Researchers list assembly by Clarivate Analytics. In 2020, … across the country. The national consortium involved researchers at the University of Texas at Austin, …
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The Expanding Universe of Methane Metabolisms in Archaea
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly … known methanogens. With the help of this information, the researchers found evolutionary relationships between … the known number of Korarchaeota genomes, which helped the researchers position the lineage within the archaeal domain. …
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How Filamentous Fungi Sense Food
… model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley used a … present in plant biomass. This is of interest for bioenergy researchers looking to improve the industrial production of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Marine Microbe Contains Multitudes
… lead author Dominique Boeuf and colleagues set sail on research cruises in 2015 and 2016. At Station ALOHA , site … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … might miss the rich contents they’re attached to.   … This research was supported by grants from the Simons Foundation …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… the complex organic matrix of the forest floor, a team of researchers have found that there is a striking division of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … for User Science (FICUS) initiative, which allows researchers to integrate the expertise and capabilities of …
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Tanja Woyke Elected to American Academy of Microbiology
Congratulations to the JGI’s Tanja Woyke , who has been elected to the American … was among the Lab’s 2015 Women @ the Lab honorees. Woyke’s research focuses on developing and harnessing single-cell … Woyke, two JGI users were also elected to the AAM: fungal researcher Jason Stajich of the University of California, …
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